View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11533_low_14 (Length: 207)

Name: NF11533_low_14
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11533_low_14
NF11533_low_14
[»] chr8 (6 HSPs)
chr8 (18-197)||(35619860-35620039)
chr8 (45-130)||(44287714-44287799)
chr8 (18-149)||(29218594-29218726)
chr8 (21-121)||(19873560-19873660)
chr8 (21-112)||(12147723-12147814)
chr8 (18-189)||(15760594-15760766)
[»] chr4 (5 HSPs)
chr4 (24-140)||(17131869-17131985)
chr4 (24-139)||(19799316-19799431)
chr4 (17-130)||(16988850-16988963)
chr4 (78-151)||(5382041-5382114)
chr4 (81-118)||(14041153-14041190)
[»] chr2 (4 HSPs)
chr2 (18-139)||(13132860-13132981)
chr2 (17-126)||(21806995-21807104)
chr2 (19-140)||(34977761-34977882)
chr2 (18-127)||(20970613-20970722)
[»] chr7 (3 HSPs)
chr7 (18-127)||(8854501-8854610)
chr7 (21-140)||(10293101-10293220)
chr7 (57-121)||(18479550-18479614)
[»] chr6 (3 HSPs)
chr6 (18-127)||(34069043-34069152)
chr6 (57-119)||(28294432-28294494)
chr6 (57-119)||(28517579-28517641)
[»] chr5 (3 HSPs)
chr5 (18-127)||(26464698-26464807)
chr5 (24-106)||(15450965-15451047)
chr5 (21-119)||(20238075-20238173)
[»] chr3 (5 HSPs)
chr3 (18-127)||(4642826-4642935)
chr3 (18-139)||(8838300-8838421)
chr3 (18-139)||(55312236-55312357)
chr3 (45-103)||(17698432-17698490)
chr3 (57-121)||(17477431-17477495)
[»] chr1 (1 HSPs)
chr1 (24-79)||(18008334-18008389)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 35619860 - 35620039
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35619860 ctttactgtgataaccaaagtgccatacacattgctgcaaatcccgtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 35619959  T
Q  118 aactgcaagctggcctcttcaagttactccatgtttcctctaaaatcaagtagctgattttttcaccaaatctctgcttc 197  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35619960 aactgcaagttgacctcttcaagttactccatgtttcctctaaaatcaagtagctgattttttcaccaaatctttgcttc 35620039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 44287799 - 44287714
Alignment:
Q  45 cacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaactgcaagctgg 130  Q
    ||||||||||| || |||||||||| ||||||||| || ||||| ||||| || ||||| || |||||||||||| | ||||||||    
T  44287799 cacattgctgcgaacccagtgttccatgaaagaacaaaacacctggaaatagactgtcatatagttagggaaaaagttcaagctgg 44287714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 29218726 - 29218594
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||||| |||| ||||||||| ||||||| ||||| ||||| |||| || | |||||||||||| ||  |  |||||| ||| |||||| |||| || |    
T  29218726 ctttactttgatgaccaaagtgtcatacactttgcttcaaattcagtatttcatgaaagaactaaacatttgaaaattggttgccacattattagagaga 29218627  T
Q  118 aactgcaagc-tggcctcttcaagttactccat 149  Q
    ||||||| || ||| ||||||||||| ||||||    
T  29218626 aactgcacgcatggtctcttcaagttcctccat 29218594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 19873560 - 19873660
Alignment:
Q  21 tactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaac 120  Q
    |||||||||||||| |||||  | |||||  | || ||||||||||||| |||||||||||| ||  | |||||||| || |||||||| || |||||||    
T  19873560 tactgtgataaccagagtgctcttcacatctcagctaatccagtgttccatgaaagaactaaacatttggaaattgactggcacattgtcagagaaaaac 19873659  T
Q  121 t 121  Q
    |    
T  19873660 t 19873660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 12147814 - 12147723
Alignment:
Q  21 tactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttag 112  Q
    ||||||||||| ||||||||  |||| |||||  |||||||||| |||| ||||||||| || ||| | ||||| ||||| ||| |||||||    
T  12147814 tactgtgataatcaaagtgcattacatattgcaacaaatccagttttccatgaaagaacaaaacacttagaaatagattgccactttgttag 12147723  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 15760594 - 15760766
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| ||||||||||| ||||| ||  |||||||||| ||||| || |||| |||| | || || || ||||| ||||| ||||| || || || || |    
T  15760594 ctttattgtgataaccagagtgctatctacattgctgctaatcctgtcttccatgaatgcaccaaacatcttgagattgactgtcatatagtcagagaga 15760693  T
Q  118 aactgcaagctggcctcttcaagttactccatgtttcctctaaa-atcaagtagctgattttttcaccaaatc 189  Q
    || ||||||||||  | |||||  | |||| | |||| |||||| ||||||| || ||||||||||| |||||    
T  15760694 aattgcaagctggtttgttcaaacttctccctatttcttctaaagatcaagtggcagattttttcacaaaatc 15760766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 17131869 - 17131985
Alignment:
Q  24 tgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaactgc 123  Q
    |||||||| |||||||| || |||||||| ||||||| |||||||| ||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |    
T  17131869 tgtgataatcaaagtgctatgcacattgcagcaaatctagtgttccatgaaagaaccaaacaccttgaaattgactgtcatattgtgagggaaaaacttc 17131968  T
Q  124 aagctggcctcttcaag 140  Q
    |||||||||| ||||||    
T  17131969 aagctggcctattcaag 17131985  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 19799431 - 19799316
Alignment:
Q  24 tgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaactgc 123  Q
    ||||| || ||||||||||| || ||||| ||  |||||||| | | ||| | ||| || || ||||| ||||||||||||||||| ||||||||||| |    
T  19799431 tgtgacaatcaaagtgccatgcatattgcagcccatccagtggttcatgagaaaaccaaacatcttgagattgattgtcacattgtgagggaaaaactac 19799332  T
Q  124 aagctggcctcttcaa 139  Q
    ||||||||||||||||    
T  19799331 aagctggcctcttcaa 19799316  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 16988850 - 16988963
Alignment:
Q  17 actttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaa 116  Q
    |||||| |||||||| ||||||||  | || || || |||||||| ||||| | ||||||| | || |||||||||||||| |||||| | ||||| ||     
T  16988850 actttattgtgataatcaaagtgctttgcatatagcagcaaatcctgtgtttcatgaaagagcaaaacaccttgaaattgactgtcacttagttagagag 16988949  T
Q  117 aaactgcaagctgg 130  Q
    ||||||||||||||    
T  16988950 aaactgcaagctgg 16988963  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 5382114 - 5382041
Alignment:
Q  78 actaagcaccttgaaattgattgtcacattgttagggaaaaactgcaagctggcctcttcaagttactccatgt 151  Q
    |||||||||||  ||||||||||||||||| | || || || |||||| |||| || ||||||||||| |||||    
T  5382114 actaagcacctgaaaattgattgtcacattttcagagagaagctgcaaactggtcttttcaagttacttcatgt 5382041  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 14041153 - 14041190
Alignment:
Q  81 aagcaccttgaaattgattgtcacattgttagggaaaa 118  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  14041153 aagcaccttgaaattgattgccacattgtgagggaaaa 14041190  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 13132860 - 13132981
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| |||||||| |||||||| || ||||||||  ||||||| || || | |||||||||||| || ||||||||||| ||||||||||| |||||||    
T  13132860 ctttattgtgataatcaaagtgctatgcacattgcatcaaatcctgtttttcatgaaagaactaaacatcttgaaattgactgtcacattgtaagggaaa 13132959  T
Q  118 aactgcaagctggcctcttcaa 139  Q
    | || ||||| ||| |||||||    
T  13132960 agctacaagcaggcatcttcaa 13132981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 21807104 - 21806995
Alignment:
Q  17 actttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaa 116  Q
    |||||| |||||||| ||||||||  | || || || |||||||| ||||| | ||||||||| || |||||||||||||| |||||| | ||||| ||     
T  21807104 actttattgtgataatcaaagtgctttgcatatagcagcaaatcctgtgtttcatgaaagaacaaaacaccttgaaattgactgtcacttagttagagag 21807005  T
Q  117 aaactgcaag 126  Q
    ||||||||||    
T  21807004 aaactgcaag 21806995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 34977882 - 34977761
Alignment:
Q  19 tttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaa 118  Q
    |||||||||| ||||||||| | || |||||||| || || ||||| |||| ||| ||||| |  || || || ||||| || |||||||| ||||||||    
T  34977882 tttactgtgacaaccaaagttctatgcacattgcagccaacccagtcttccatgagagaaccatacatctagagattgactgccacattgtgagggaaaa 34977783  T
Q  119 actgcaagctggcctcttcaag 140  Q
    ||| ||||| ||||||||||||    
T  34977782 acttcaagcgggcctcttcaag 34977761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 20970722 - 20970613
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| ||||||||||| |||||  | | |||||| || ||||||||||||| ||| ||||| || ||| | ||||||||||||||| | ||||| || |    
T  20970722 ctttattgtgataaccatagtgctctgcgcattgcagccaatccagtgttccatgagagaacaaaacacttagaaattgattgtcacttggttagagaga 20970623  T
Q  118 aactgcaagc 127  Q
    |||| |||||    
T  20970622 aactacaagc 20970613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 8854501 - 8854610
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    |||||||||||||||||||||||  |||||||||| || || | ||| |||| ||||||||| ||||||||||| ||||||||| || | ||||| ||||    
T  8854501 ctttactgtgataaccaaagtgctttacacattgcagccaacctagttttccatgaaagaaccaagcaccttgagattgattgttacttggttagagaaa 8854600  T
Q  118 aactgcaagc 127  Q
    | || |||||    
T  8854601 agctacaagc 8854610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 10293101 - 10293220
Alignment:
Q  21 tactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaac 120  Q
    ||||||||||| |||||| | || |||||||| || || ||||| |||| ||| ||||| || || ||| ||||||| || || ||||| |||||||||     
T  10293101 tactgtgataatcaaagtactatgcacattgcagctaaaccagtcttccatgagagaaccaaacatcttaaaattgactggcatattgtgagggaaaaat 10293200  T
Q  121 tgcaagctggcctcttcaag 140  Q
    | ||||  ||||||||||||    
T  10293201 tacaagtaggcctcttcaag 10293220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 18479614 - 18479550
Alignment:
Q  57 aatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaact 121  Q
    ||||||||||||| |||||||||||| ||  | |||||||| || |||||||| || ||||||||    
T  18479614 aatccagtgttccatgaaagaactaaacatttggaaattgactgccacattgtcagagaaaaact 18479550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 34069043 - 34069152
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||||||||| ||||| |||||| |||||||||| || || ||||| || | ||||||||| ||||||||||| ||||| |||||| | ||||| ||||    
T  34069043 ctttactgtgacaaccagagtgccttacacattgcagctaacccagtctttcatgaaagaaccaagcaccttgagattgactgtcacttggttagagaaa 34069142  T
Q  118 aactgcaagc 127  Q
    |||| |||||    
T  34069143 aactacaagc 34069152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 28294432 - 28294494
Alignment:
Q  57 aatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaa 119  Q
    ||||||||||||| |||||||||||| ||  | |||||||| ||||||||||| || ||||||    
T  28294432 aatccagtgttccatgaaagaactaaacatttggaaattgactgtcacattgtcagagaaaaa 28294494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 28517641 - 28517579
Alignment:
Q  57 aatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaa 119  Q
    ||||||||||||| |||||||||||| ||  | |||||||| ||||||||||| || ||||||    
T  28517641 aatccagtgttccatgaaagaactaaacatttggaaattgactgtcacattgtcagagaaaaa 28517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 26464807 - 26464698
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| ||||||||||| |||||  | |||||||| |||||||||||||| | |||||| || || || || |||||||| |||||| | ||||||||||    
T  26464807 ctttattgtgataaccagagtgctcttcacattgcagcaaatccagtgtttcatgaaaggacaaaacatctggaaattgactgtcacttggttagggaaa 26464708  T
Q  118 aactgcaagc 127  Q
    |||| |||||    
T  26464707 aactacaagc 26464698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 15450965 - 15451047
Alignment:
Q  24 tgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacat 106  Q
    ||||| |||||||||||  | ||||| ||||| |||||||| || | ||||||||| |||||| | || ||||||||||||||    
T  15450965 tgtgacaaccaaagtgcacttcacatagctgctaatccagtttttcatgaaagaaccaagcacttggacattgattgtcacat 15451047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 20238173 - 20238075
Alignment:
Q  21 tactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaa 119  Q
    |||||||| ||||| |||||  |||||||||| || ||||| || || | |||| | ||||| ||| | || ||||| |||||||||||||||||||||    
T  20238173 tactgtgacaaccatagtgctttacacattgccgctaatcctgtatttcatgaacggactaaacacttagatattgactgtcacattgttagggaaaaa 20238075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 4642935 - 4642826
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    |||||||||||||||||||||||  | |||||||| || || | ||| || | ||||||||| ||||||||||| |||||||||||| | ||||| ||||    
T  4642935 ctttactgtgataaccaaagtgctttgcacattgcagccaaccgagtatttcatgaaagaaccaagcaccttgagattgattgtcacttggttagagaaa 4642836  T
Q  118 aactgcaagc 127  Q
    | || |||||    
T  4642835 agctacaagc 4642826  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 8838300 - 8838421
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| |||||||| |||||||| || ||||||||  | ||||| || || | ||||||||| || || ||||| ||||||||||||||||| |||||||    
T  8838300 ctttattgtgataatcaaagtgctatgcacattgcatccaatcctgtttttcatgaaagaaccaaacatcttgagattgattgtcacattgtgagggaaa 8838399  T
Q  118 aactgcaagctggcctcttcaa 139  Q
    | || ||||| ||| |||||||    
T  8838400 agctacaagcaggcatcttcaa 8838421  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 55312236 - 55312357
Alignment:
Q  18 ctttactgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaa 117  Q
    ||||| |||||||| |||||||| || ||||||||  ||||||| || || | |||||||||||| || ||||||||||| || || ||||| |||||||    
T  55312236 ctttattgtgataatcaaagtgctatgcacattgcatcaaatcctgtttttcatgaaagaactaaacatcttgaaattgactgccatattgtcagggaaa 55312335  T
Q  118 aactgcaagctggcctcttcaa 139  Q
    | || || || ||| |||||||    
T  55312336 agctacaggcaggcatcttcaa 55312357  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 17698432 - 17698490
Alignment:
Q  45 cacattgctgcaaatccagtgttccgtgaaagaactaagcaccttgaaattgattgtca 103  Q
    ||||||||||||||||||||||| | ||| || ||||| || ||||||||||| |||||    
T  17698432 cacattgctgcaaatccagtgtttcatgagaggactaaacatcttgaaattgactgtca 17698490  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 17477495 - 17477431
Alignment:
Q  57 aatccagtgttccgtgaaagaactaagcaccttgaaattgattgtcacattgttagggaaaaact 121  Q
    |||||||| |||| ||||||||| ||||| ||  |||||||||| ||||||||||| || |||||    
T  17477495 aatccagttttccatgaaagaaccaagcatctgaaaattgattgccacattgttagagagaaact 17477431  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 18008334 - 18008389
Alignment:
Q  24 tgtgataaccaaagtgccatacacattgctgcaaatccagtgttccgtgaaagaac 79  Q
    ||||||||||||||| | || ||||| ||| ||||||||||||||| |||||||||    
T  18008334 tgtgataaccaaagttcaattcacatagcttcaaatccagtgttccatgaaagaac 18008389  T

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