View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11533_low_2 (Length: 545)

Name: NF11533_low_2
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11533_low_2
NF11533_low_2
[»] chr4 (3 HSPs)
chr4 (1-527)||(1068054-1068580)
chr4 (263-348)||(47964184-47964269)
chr4 (1-80)||(8542036-8542113)
[»] chr8 (5 HSPs)
chr8 (156-401)||(768241-768487)
chr8 (412-527)||(768030-768145)
chr8 (1-80)||(23821370-23821447)
chr8 (1-80)||(40172180-40172257)
chr8 (263-348)||(23739396-23739481)
[»] chr1 (2 HSPs)
chr1 (208-401)||(39074611-39074806)
chr1 (1-78)||(23657287-23657364)
[»] chr7 (1 HSPs)
chr7 (81-155)||(24762891-24762964)
[»] chr3 (3 HSPs)
chr3 (81-155)||(52130326-52130399)
chr3 (45-80)||(50830279-50830314)
chr3 (45-80)||(50845539-50845574)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 1068054 - 1068580
Alignment:
Q  1 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattttttgttaacatatataaataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1068054 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattttttgttaacatatataaataaa 1068153  T
Q  101 tatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataattaacctatctccattgatcaatcataaatccaagtnnnnnnnnng 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||              
T  1068154 tatgtc-aaatggcagattgatggaatatgcatcttaaaagaacatacctataattaacctatctccattgatcaatcataaattcaagtaaaaaaaat- 1068251  T
Q  201 agaataaaatgaaaatacctaatgcatgaccaaacagaaataaatgatttagttgctata--taaatttcacagcaaatcatctgatagcataagagaaa 298  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  1068252 agaataaaatgaaaatacctaatgcatgaccaaacaaaaacaaatgatttagttgctatatataaatttcacagcaaatcatctgatagcataagataaa 1068351  T
Q  299 cagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatcggccaccgcaaatcagagaaatggtctccaaaattcattacgatgca 398  Q
    ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1068352 cagatttaaggattacctcaaccgtcgaaatcaatacgtcaccaaaatggatcggccaccgcaaatcagagaaatggtctccaaaattcattacgatgca 1068451  T
Q  399 ggtatcaaattcagagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagagaaaaga 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1068452 ggtatcaaattcagagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagagaaaaga 1068551  T
Q  499 agaaagaaagtaacttacatggtggaaag 527  Q
    |||||||| ||||||||||||||||||||    
T  1068552 agaaagaaggtaacttacatggtggaaag 1068580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 47964184 - 47964269
Alignment:
Q  263 aatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatgg 348  Q
    ||||||||| |||| ||| | ||| |||||||||| |||||||||| | ||||| ||| ||| |||||||||| ||||||||||||    
T  47964184 aatttcacaacaaaccatttaataccataagagaagcagatttaagcactaccttaacggtcaaaatcaaatcatcaccgaaatgg 47964269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8542113 - 8542036
Alignment:
Q  1 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattttt 80  Q
    ||||||||||||| | ||||||||||||  |   ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  8542113 atatcaaacatttatttttcaaaatttcgaag--taccaaaaatgtgcttataggcaatgtcaccatactcaatattttt 8542036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 156 - 401
Target Start/End: Complemental strand, 768487 - 768241
Alignment:
Q  156 taacctatctccattgatcaatcataaatccaagtnnnnnnnnngagaataaaatgaaaatacctaatgcatgaccaaacagaaataaatgatttagttg 255  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  768487 taacctatctccattgatcaatcataaatccaagtaaaaaaaat-agaataaaatgaaaatacctaatgcatgaccaaacagaaacaaatgatttagttg 768389  T
Q  256 ctatata--aatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatcgg 353  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  768388 ctatatataaatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaatcgtcgaaatcaaatcgtcaccaaaatggatcgg 768289  T
Q  354 ccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  768288 ccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt 768241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 412 - 527
Target Start/End: Complemental strand, 768145 - 768030
Alignment:
Q  412 gagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagagaaaagaagaaagaaagtaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  768145 gagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagagaaaagaggaaagaaggtaa 768046  T
Q  512 cttacatggtggaaag 527  Q
    | ||||||||||||||    
T  768045 catacatggtggaaag 768030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 23821447 - 23821370
Alignment:
Q  1 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattttt 80  Q
    ||||||||||||| | ||||||||||||  |   ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  23821447 atatcaaacatttatttttcaaaatttcgaag--taccaaaaatgtgcttataggcaatgtcaccatactcaatattttt 23821370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 40172180 - 40172257
Alignment:
Q  1 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattttt 80  Q
    ||||||||||||| | ||||||||||||  |   ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  40172180 atatcaaacatttatttttcaaaatttcgaag--taccaaaaatgtgcttataggcaatgtcaccatactcaatattttt 40172257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 23739481 - 23739396
Alignment:
Q  263 aatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatgg 348  Q
    ||||||||| |||||||||| ||| ||||| |||| ||||| |||| |||| || ||| || |||||||||||||| | |||||||    
T  23739481 aatttcacaacaaatcatctaataccataaaagaagcagatctaagcattagcttaacggttgaaatcaaatcgtcgctgaaatgg 23739396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 208 - 401
Target Start/End: Original strand, 39074611 - 39074806
Alignment:
Q  208 aatgaaaatacctaatgcatgaccaaacagaaataaatgatttagttgctatata--aatttcacagcaaatcatctgatagcataagagaaacagattt 305  Q
    |||||||||||||||| |||||||||||||||| ||| ||| |||||||||| ||  ||||||||| ||||||||||||||||||||||||| || ||||    
T  39074611 aatgaaaatacctaattcatgaccaaacagaaacaaacgatatagttgctatttatcaatttcacaacaaatcatctgatagcataagagaagcaaattt 39074710  T
Q  306 aaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatcggccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt 401  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |  |||||||||||| ||| ||||||||||| ||||||||    
T  39074711 aaggattacctcaaccgtcgaaatcaaattgtcagcgaaatggatcggccaccacgacccagagaaatggtttccgaaattcattacaatgcaggt 39074806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23657287 - 23657364
Alignment:
Q  1 atatcaaacatttgtgtttcaaaatttctcacaataccaaaaacgtgcctataggcaatgtgaccatactcaatattt 78  Q
    ||||||||||||  ||| |||||||| ||| || ||||  ||| ||||||||| ||||||| ||||| ||||||||||    
T  23657287 atatcaaacattcatgtctcaaaattgctctcagtaccgtaaatgtgcctataagcaatgtcaccatcctcaatattt 23657364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 24762964 - 24762891
Alignment:
Q  81 tgttaacatatataaataaatatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataat 155  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  24762964 tgttaacatatataaataaagatgtc-aaatggcaggttgatggaatatgcatcttaaaagaacatacctataat 24762891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 52130399 - 52130326
Alignment:
Q  81 tgttaacatatataaataaatatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataat 155  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  52130399 tgttaacatatataaataaagatgtc-aaatggcaggttgatggaatatgcatcttaaaagaacatacctataat 52130326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 50830279 - 50830314
Alignment:
Q  45 gtgcctataggcaatgtgaccatactcaatattttt 80  Q
    |||||||| |||||||||||||||||||||||||||    
T  50830279 gtgcctattggcaatgtgaccatactcaatattttt 50830314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 50845574 - 50845539
Alignment:
Q  45 gtgcctataggcaatgtgaccatactcaatattttt 80  Q
    |||||||| |||||||||||||||||||||||||||    
T  50845574 gtgcctattggcaatgtgaccatactcaatattttt 50845539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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