View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11533_low_4 (Length: 397)
Name: NF11533_low_4
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 116 - 368
Target Start/End: Complemental strand, 45342735 - 45342496
Alignment:
| Q |
116 |
attcccaatgcatatttgagatgcatggagttagaagacattgctgaatttgcagacgatgatgagaaatattattatagtgttgtattcgtatgatgaa |
215 |
Q |
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| T |
45342735 |
attcccaatgcatatttgagatg----gagttagaagacattgctgaatttgcagacgatgatgacaaatattat---agtgttgtattcgtatgatgaa |
45342643 |
T |
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| Q |
216 |
gtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
315 |
Q |
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| T |
45342642 |
gtgttattttgaaaattaaaaagatgctctgtt-----ggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
45342548 |
T |
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| Q |
316 |
accttaaaacttttggcatatttgttcacgaaatatggtatcacattcacagg |
368 |
Q |
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| T |
45342547 |
acctt-aaacttttgacatatttgttcacgaaatatggtatcacattcacagg |
45342496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 45347089 - 45346970
Alignment:
| Q |
248 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaa |
347 |
Q |
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| T |
45347089 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaatacctt-aaacttttgacatatttgttcacgaa |
45346991 |
T |
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| Q |
348 |
atatggtatcacattcacagg |
368 |
Q |
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| T |
45346990 |
atatggtatcacattcacagg |
45346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 45342872 - 45342774
Alignment:
| Q |
16 |
tgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtcaaagtgatgctgggacctttaaccattaaattaattctacctgtcttggtg |
114 |
Q |
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| T |
45342872 |
tgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtcaaagtaatgctgggacctttaaccattaaattaattctacctgtcttggtg |
45342774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 45370719 - 45370669
Alignment:
| Q |
140 |
atggagttagaagacattgctgaatttgcagacgatgatgagaaatattat |
190 |
Q |
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| T |
45370719 |
atggagttagaagacattgttgaatttgcagatgatgatgagaaatgttat |
45370669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 48843579 - 48843494
Alignment:
| Q |
16 |
tgatcgagttggatgcaagtttgttaagcccctgtcacattttcagtcaaagtgatgctgggacctttaaccattaaattaattcta |
102 |
Q |
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| T |
48843579 |
tgatagagttggatgtaagtttgttg-gcccttgtcaaattttcagtcaaagaaaagctgggacatttgaccaataaattaattcta |
48843494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 48855813 - 48855852
Alignment:
| Q |
146 |
ttagaagacattgctgaatttgcagacgatgatgagaaat |
185 |
Q |
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| T |
48855813 |
ttagaagatattgctgaatttgcagatgatgatgagaaat |
48855852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 349
Target Start/End: Original strand, 48865371 - 48865518
Alignment:
| Q |
196 |
tgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataat |
295 |
Q |
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| T |
48865371 |
tgttgcattcttatgatgaagtgttatttccaagattaaaaagatgctccattgaattgg---tgtgatagagttcatttatacaatattgaaaaacaat |
48865467 |
T |
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| Q |
296 |
tcatcttgccttcacctaataccttaaaacttttggcat-atttgttcacgaaat |
349 |
Q |
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| T |
48865468 |
tta---tgtcttcacataatagctt-aaacttttggcataatttgttcacaaaat |
48865518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 45349616 - 45349561
Alignment:
| Q |
217 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
277 |
Q |
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| T |
45349616 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45349561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 45359095 - 45359040
Alignment:
| Q |
217 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
277 |
Q |
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| T |
45359095 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45359040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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