View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11533_low_5 (Length: 390)
Name: NF11533_low_5
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 49019858 - 49020213
Alignment:
| Q |
19 |
caactaggtctaagaaaaattgattttgaatcaatacaacaagtgttagaagctgttcaatccacagtggtttcagcagttggtaactcttactttgatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49019858 |
caactaggtctaagaaaaattgattttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatg |
49019957 |
T |
|
| Q |
119 |
catacgttttatcagaatcaagcctctttgtttatccaactaagatcataatcaaaacatgtggaacaacccaacttctcaaatccattcttccattaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019958 |
catacgttttatcagaatcaagcctctttgtttatccaactaagatcataatcaaaacatgtggaacaacccaacttctcaaatccattcttccattaat |
49020057 |
T |
|
| Q |
219 |
tcactatgcaaaccaaacaggcctcactttatgctcttgtcgctacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49020058 |
tcactatgcaaaccaaacaggcctcactttatgctcttgtcgctacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaagcttc |
49020157 |
T |
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| Q |
319 |
aatgacgaagtaacctatttagaagacactatcccttcaaatctttgccatagaaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49020158 |
aatgacgaagtaacctatttagaagacactatcccttcaaatctttgccatagaaa |
49020213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 7081944 - 7081594
Alignment:
| Q |
19 |
caactaggtctaagaaaaattgattttgaatcaatacaacaagtgttagaagctgttcaatccacagtggtttcagcagttggtaactcttactttgatg |
118 |
Q |
| |
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|||||||| ||||||||| |||| |||||||| || |||||| | || |||||||||||| |||||| |||||||||||||| |||||||||||||||| |
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| T |
7081944 |
caactaggcctaagaaaacttgagtttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatg |
7081845 |
T |
|
| Q |
119 |
catacgttttatcagaatcaagcctctttgtttatccaactaagatcataatcaaaacatgtggaacaacccaacttctcaaatccattcttccattaat |
218 |
Q |
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| || ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||| ||||| |
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| T |
7081844 |
cctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatccatcattcccttaat |
7081745 |
T |
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| Q |
219 |
tcactatgcaaaccaaacaggcctcactttatgctcttgtc-----gctacacaagaggaagcttcatcttcccaaatgcacaacctttcccttacacaa |
313 |
Q |
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||| |||||| || || | | |||||| |||| || ||||||||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
7081744 |
ctactttgcaaa-cactca-ccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaacctttccctcacactt |
7081647 |
T |
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| Q |
314 |
gcttcaatgacgaagtaacctatttagaagacactatcccttcaaatctttgc |
366 |
Q |
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||||||||| ||||| | || |||||| ||||||||||||||||||||||| |
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| T |
7081646 |
ccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgc |
7081594 |
T |
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