View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11533_low_7 (Length: 311)
Name: NF11533_low_7
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 11302181 - 11302360
Alignment:
| Q |
17 |
aaaaagtgatgacttcgccttatgaacaaaaatgtttctaaaattcaatagatgccgtggcagtatcttaaacaaaaggagagaaatgggttagtggaag |
116 |
Q |
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| T |
11302181 |
aaaaagtgatgacttcgccttatgaacaaaaacgtttctaaaattcaatagttgccgtggcagtatcttaaacaaaaggagagaaatgggttagtggaag |
11302280 |
T |
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| Q |
117 |
aggttttgacatcaaacgaaattnnnnnnnnnnnntggacctatcaccaaacccagaaatgcacagtatgcaaaagaaaaaa |
198 |
Q |
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| T |
11302281 |
aggttttgacatcaaacgaaatt--aaaaaaaaaatggacctatcaccaaacccagaaatgcacagtatgcaaaagaaaaaa |
11302360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 11303128 - 11303250
Alignment:
| Q |
17 |
aaaaagtgatgacttcgccttatgaacaaaaatgtttctaaaattcaatagatgccgtggcagtatcttaaacaaaaggagagaaatgggttagtggaag |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11303128 |
aaaaagtgatgacttcgccttatgaacaaaaacgtttctaaaattcaatagttgccgtggcagtatcttaaacaaaaggagagaaatgggttagtggaag |
11303227 |
T |
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| Q |
117 |
aggttttgacatcaaacgaaatt |
139 |
Q |
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| T |
11303228 |
aggttttgacatcaaacgaaatt |
11303250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 11303275 - 11303390
Alignment:
| Q |
193 |
aaaaaataaataaacctcgctctcttctctttatctcaagattttatattgtccaatcgcatacataaagaatgataaatttaatagtttaaaaatagaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11303275 |
aaaaaataaataaacctcgctctcttctctttatctcaagattttatactgtccaatcgcatacataaagaatgataaatttaatagtttaaaaatagaa |
11303374 |
T |
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| Q |
293 |
aaatccaacacttctt |
308 |
Q |
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|||||||||||||||| |
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| T |
11303375 |
aaatccaacacttctt |
11303390 |
T |
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