View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11534_high_11 (Length: 356)
Name: NF11534_high_11
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 10219434 - 10219117
Alignment:
| Q |
1 |
agggccaatgggagatggagttggagatgatgcaaggtttgtttggagtgatgaagtttctatggaattggagtggtgttggtgctgattctaaacgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10219434 |
agggccaatgggagatggagttggagatgatgcaaggtttgtttggagtgatgaagtttctatggaattggagtggtgttggtgctgattctaaacgttc |
10219335 |
T |
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| Q |
101 |
tatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattctca--gatactatgttatttcatctggtt |
198 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10219334 |
tatgcttcttttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattctcacagatactatgttatttcatctggtt |
10219235 |
T |
|
| Q |
199 |
cagttgttgtgatcgatcacca---tataaaaatcactcacttccaccaaagtgcaagtcccacatcgaccaatttataaactaaactatgctgcttact |
295 |
Q |
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||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
10219234 |
cagttgt---gatcgatcaccaccatataaaaaa---tcacttccaccaaactgcaagtcccacatcaaccaattcataaactaaactatgctgcttact |
10219141 |
T |
|
| Q |
296 |
tataaaatgaaaagacctcagctt |
319 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
10219140 |
tataaaatgaaaagacctcagctt |
10219117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 13853932 - 13854027
Alignment:
| Q |
76 |
gtgttggtgctgattctaaacgttctatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattc |
171 |
Q |
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| T |
13853932 |
gtgttggtggagattctaaacgttctatggttctgttgcttcctaaacttaattctcgtacttctctccatagttcttctatcttctcattcattc |
13854027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 10102729 - 10102802
Alignment:
| Q |
254 |
tcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctcagcttgtcaaaat |
327 |
Q |
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| T |
10102729 |
tcccacatcgaccaattcataaactaaactatgctgcttacttataaaacgaaaagacctcagcttgttaaaat |
10102802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 10212463 - 10212402
Alignment:
| Q |
253 |
gtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
314 |
Q |
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|||||||||| |||||| |||||||||||||||||| | || |||||||||||| |||||| |
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| T |
10212463 |
gtcccacatctaccaatgcataaactaaactatgctgatcacatataaaatgaaatgacctc |
10212402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 10105811 - 10105867
Alignment:
| Q |
251 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaa |
307 |
Q |
| |
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||||||||||||| ||| || |||||||||||||||| |||| | |||||||||||| |
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| T |
10105811 |
aagtcccacatcgcccagttcataaactaaactatgcagctttcatataaaatgaaa |
10105867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 10109224 - 10109275
Alignment:
| Q |
251 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
302 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||| | ||||||| |
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| T |
10109224 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10109275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 10209914 - 10209863
Alignment:
| Q |
251 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
302 |
Q |
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|
||||||||||||| |||||| |||||||||||||||| |||| | ||||||| |
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| T |
10209914 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10209863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 12104737 - 12104686
Alignment:
| Q |
251 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
302 |
Q |
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|
|||||||||||||||||||| |||||||||| ||||| ||| || ||||||| |
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| T |
12104737 |
aagtcccacatcgaccaattcataaactaaattatgcagctcacatataaaa |
12104686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 13855940 - 13856002
Alignment:
| Q |
252 |
agtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
314 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||| | | || ||||||| |||| |||||| |
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| T |
13855940 |
agtcccacatcaaccaattcataaactaaactatgcagttcacatataaaaagaaaggacctc |
13856002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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