View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11534_high_2 (Length: 912)

Name: NF11534_high_2
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11534_high_2
NF11534_high_2
[»] chr6 (4 HSPs)
chr6 (17-902)||(11191002-11191886)
chr6 (214-297)||(10084609-10084692)
chr6 (456-502)||(11191402-11191448)
chr6 (235-318)||(34374328-34374411)
[»] chr3 (2 HSPs)
chr3 (724-900)||(368175-368351)
chr3 (209-279)||(3064246-3064316)
[»] chr4 (7 HSPs)
chr4 (361-455)||(55564019-55564113)
chr4 (750-887)||(22691791-22691928)
chr4 (209-314)||(10494392-10494497)
chr4 (732-833)||(37633809-37633910)
chr4 (585-642)||(55563295-55563352)
chr4 (490-543)||(55563582-55563635)
chr4 (540-584)||(55563454-55563498)
[»] chr8 (3 HSPs)
chr8 (714-825)||(30440961-30441072)
chr8 (65-114)||(38432096-38432145)
chr8 (249-318)||(2688645-2688714)
[»] chr2 (4 HSPs)
chr2 (216-317)||(32162488-32162589)
chr2 (837-902)||(32163177-32163242)
chr2 (132-212)||(10311454-10311534)
chr2 (65-114)||(10309086-10309135)
[»] chr5 (1 HSPs)
chr5 (214-316)||(18251860-18251962)
[»] chr1 (1 HSPs)
chr1 (646-688)||(43375006-43375048)


Alignment Details
Target: chr6 (Bit Score: 866; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 17 - 902
Target Start/End: Complemental strand, 11191886 - 11191002
Alignment:
Q  17 ataaagagcgtccaataccttcataaccattaatagtagaagacaagaaatagcagcagcttcatcaacgaccaataattcaacttgcgagagcttttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191886 ataaagagcgtccaataccttcataaccattaatagtagaagacaagaaatagcagcagcttcatcaacgaccaataattcaacttgcgagagcttttgt 11191787  T
Q  117 ttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcctgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11191786 ttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcgtgg 11191687  T
Q  217 tactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttctt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191686 tactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttctt 11191587  T
Q  317 cgacaacagctagctattgaagatccgatgattttagtagcggggatacaaaatcattgaatcgataagtgacttccaatggttttaatcgctccacata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11191586 cgacaacagctagctattgaagatccgatgattttagtagcggggatacaaaatcattgaatc-ataagtgacttccaatggttttaatcgctccacata 11191488  T
Q  417 caatttcttcaagccatctattattgatgtcattgcactaaccgtaaagaagttacctcttagtaagaggtaacttctttacggtttttgaagcaactgg 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11191487 caatttcttcaagccatctattattgatgtcattgcactaaccgtaaagaagttacctcttactaagaggtaacttctttacggtttttgaagcaactgg 11191388  T
Q  517 tggcaaaggctgaggctgaccagtaccaaatacatcaggttgggcatttattgtcgaactctctttatctgctactaatacatcaattacttccatgaca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191387 tggcaaaggctgaggctgaccagtaccaaatacatcaggttgggcatttattgtcgaactctctttatctgctactaatacatcaattacttccatgaca 11191288  T
Q  617 ggaagtttgatctttttattgtcaacgccttcttattttccatatcagcatcatgcgataatttcccaccatatccgagatccttactcaacttctcctt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191287 ggaagtttgatctttttattgtcaacgccttcttattttccatatcagcatcatgcgataatttcccaccatatccgagatccttactcaacttctcctt 11191188  T
Q  717 catattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagaga 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191187 catattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagaga 11191088  T
Q  817 gagaatctatcgcgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 902  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11191087 gagaatctatcccgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 11191002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 10084692 - 10084609
Alignment:
Q  214 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacat 297  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||    
T  10084692 tggtaccagatgaccaacccgtgagtggtgacaatttttgtaaaataacataatcaaatggttggtcgatacctgtaacaacat 10084609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 11191402 - 11191448
Alignment:
Q  456 aaccgtaaagaagttacctcttagtaagaggtaacttctttacggtt 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11191402 aaccgtaaagaagttacctcttagtaagaggtaacttctttacggtt 11191448  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 34374328 - 34374411
Alignment:
Q  235 tgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 318  Q
    |||||||||  |||||||||||| ||| |||||||||| ||||||||||| || || |||||  ||||||||||||||||||||    
T  34374328 tgagtggtgtaaatttttgtaaagtaatataatcagatggttggtcgatatctgtagcaacacgtcgatccggtggtttcttcg 34374411  T

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Target: chr3 (Bit Score: 105; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 724 - 900
Target Start/End: Original strand, 368175 - 368351
Alignment:
Q  724 tcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatc 823  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||||| |||| |||||| ||||| || |||||||| ||||    
T  368175 tcatcataaccacccttcaccggcgtttcatacatccgtggcgacgagagctgattcctctccaatttttcaattgaaacaagtggcgagagagacaatc 368274  T
Q  824 tatcgcgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctc 900  Q
    || |||||||||||||||||| |||||| | |||||| |||||||||||||||  ||||||||||||||||||||||    
T  368275 taccgcgagagttaaatctttcaagcatcaactgtttcatccttctccaagttcgaatagggttttttctttgtctc 368351  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 3064246 - 3064316
Alignment:
Q  209 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggt 279  Q
    |||| ||||||||| |||||||||| ||||| |||  |||||||||||| ||||||||||| || ||||||    
T  3064246 aatcgtggtactaggtgaccaatccttgagttgtggaaatttttgtaaagtaacataatcaaatggttggt 3064316  T

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Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 361 - 455
Target Start/End: Complemental strand, 55564113 - 55564019
Alignment:
Q  361 gatacaaaatcattgaatcgataagtgacttccaatggttttaatcgctccacatacaatttcttcaagccatctattattgatgtcattgcact 455  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  55564113 gatacaaaatcattgaatcgataagtgacctccaatggttttaaccgctccacatacaatttcttcaatccatctattattgatgtcactgcact 55564019  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 750 - 887
Target Start/End: Complemental strand, 22691928 - 22691791
Alignment:
Q  750 ttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatctatcgcgagagttaaatcttttaagc 849  Q
    |||||||||||| ||||||| ||| ||||||||| |||| |||| |||||| |||||||| |||||||| |||||| |||||||||||||||||| || |    
T  22691928 ttgatacatccgtggcgacgagagttgcttcctcaccaatttttcaattgaaacaagcggcgagagagacaatctaccgcgagagttaaatctttcaatc 22691829  T
Q  850 ataagctgttttatccttctccaagttgaaatagggtt 887  Q
    || | |||||| |||||||||||||||  |||||||||    
T  22691828 atcaactgtttcatccttctccaagttcgaatagggtt 22691791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 10494497 - 10494392
Alignment:
Q  209 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggt 308  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||| |||||  ||||||| ||    
T  10494497 aatcatggtactagatgaccaatccgtgagtggtgtgaatttttgtaaagtaacataatcagatggttggtcgatacctatagcaacacgtcgatccagt 10494398  T
Q  309 ggtttc 314  Q
    ||||||    
T  10494397 ggtttc 10494392  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 732 - 833
Target Start/End: Complemental strand, 37633910 - 37633809
Alignment:
Q  732 accacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatctatcgcga 831  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||  ||||||| |||||||| |||||| |||||    
T  37633910 accacccttcactggcgtttgatacatccgcggcgacgagagctgcttcctctccaaattctcaattgaagcaagcggcgagagagacaatctaccgcga 37633811  T
Q  832 ga 833  Q
    ||    
T  37633810 ga 37633809  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 585 - 642
Target Start/End: Complemental strand, 55563352 - 55563295
Alignment:
Q  585 ctgctactaatacatcaattacttccatgacaggaagtttgatctttttattgtcaac 642  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  55563352 ctgctactaatacatcaattccttccatgactggaagtttgatcttttcattgtcaac 55563295  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 55563635 - 55563582
Alignment:
Q  490 cttctttacggtttttgaagcaactggtggcaaaggctgaggctgaccagtacc 543  Q
    ||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
T  55563635 cttctttacagattttgaagcaactggtggaaaaggccgaggctgaccagtacc 55563582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 584
Target Start/End: Complemental strand, 55563498 - 55563454
Alignment:
Q  540 taccaaatacatcaggttgggcatttattgtcgaactctctttat 584  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  55563498 taccaaataaatcaggttgggcatttattgtcgaactcgctttat 55563454  T

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Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 714 - 825
Target Start/End: Complemental strand, 30441072 - 30440961
Alignment:
Q  714 cttcatattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgag 813  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||| ||||| |||| | |||||||||| |||||| | ||||||  ||    
T  30441072 cttcatatcctcatcataaccacccttcatcgacatttgatacatccgcggcaacgagagctacttcatatccaaattttcaattgaaaaaagcggcaag 30440973  T
Q  814 agagagaatcta 825  Q
    ||||| ||||||    
T  30440972 agagacaatcta 30440961  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 38432096 - 38432145
Alignment:
Q  65 aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt 114  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  38432096 aatagcagctgcttcatcaacaaccaataattcaacttgcgaaagctttt 38432145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 2688714 - 2688645
Alignment:
Q  249 ttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 318  Q
    ||||||||| ||||||||||  || ||||||||||| || || |||||  ||||||| ||||||||||||    
T  2688714 ttttgtaaagtaacataatcgtatggttggtcgatatctgtagcaacacgtcgatccagtggtttcttcg 2688645  T

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Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 32162488 - 32162589
Alignment:
Q  216 gtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttct 315  Q
    |||||||||||||||||||||||| |||  ||||| |||||| |||||||||||||| |||||| |||| |||||||||||  |||||||  ||||||||    
T  32162488 gtactagatgaccaatccatgagtagtgggaatttctgtaaattaacataatcagatggttggttgatacctataacaacacgtcgatccaatggtttct 32162587  T
Q  316 tc 317  Q
    ||    
T  32162588 tc 32162589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 837 - 902
Target Start/End: Original strand, 32163177 - 32163242
Alignment:
Q  837 aaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 902  Q
    ||||||||||||||| | |||||| |||||||| ||||||  |||||||||||||||||| |||||    
T  32163177 aaatcttttaagcatcaactgtttcatccttctgcaagttcgaatagggttttttctttgcctctg 32163242  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 10311454 - 10311534
Alignment:
Q  132 cgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatc 212  Q
    ||||||||||||||||||||| ||||| || | || |||||||| ||||  |||||||||||| |||  ||||||||||||    
T  10311454 cgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatc 10311534  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10309086 - 10309135
Alignment:
Q  65 aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt 114  Q
    |||||| |||||||||||||| ||||| | ||||||||| ||||||||||    
T  10309086 aatagcggcagcttcatcaactaccaacagttcaacttgtgagagctttt 10309135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 18251962 - 18251860
Alignment:
Q  214 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggttt 313  Q
    |||||| ||||||||||||| | |||||||  |||||||||||| ||| |||||||||| |||||| |||| || || || || |||||||| |||||||    
T  18251962 tggtacgagatgaccaatccgtaagtggtgggaatttttgtaaagtaatataatcagatggttggttgatacctgtagcatcacatcgatccagtggttt 18251863  T
Q  314 ctt 316  Q
    |||    
T  18251862 ctt 18251860  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 688
Target Start/End: Original strand, 43375006 - 43375048
Alignment:
Q  646 ttcttattttccatatcagcatcatgcgataatttcccaccat 688  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||    
T  43375006 ttcttcttttccatatcagcatcatgcggtaatttctcaccat 43375048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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