View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11534_high_3 (Length: 827)
Name: NF11534_high_3
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 49 - 810
Target Start/End: Complemental strand, 5350585 - 5349820
Alignment:
| Q |
49 |
tataattacaatttacaggcgtcgtcagatttcaatactttggattttgatctgccttttgcaacagtctatgtagcacaaagtgcagttcttcttataa |
148 |
Q |
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| T |
5350585 |
tataattacaatttacaggcgtcatcagatttcaatactttggattttgatctgccttttgcaacagtctatgtagcacaaagtgcagttcttcttataa |
5350486 |
T |
|
| Q |
149 |
caggaatcttgatcatgagctcggttacatggcaagttcttatagtttccattctagctgcagttacaggatactatataaaggttggtgcaatttctag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350485 |
caggaatcttgatcatgagctcggttacatggcaagttgttatagtttccattctagctgcagttacaggatactatataaaggttggtgcaatttctag |
5350386 |
T |
|
| Q |
249 |
tctaagtggtcaagagttcgataatgactattgcgtatagagaaaacttagttgggaggtgataatccaccatttttgtccaacaggttctcatacgaag |
348 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
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| T |
5350385 |
tctaagtggtcaagagttcgatcatgactattgcgtatagagaaaacttagttgggaggtgataatccaccgtttttgtccaacaggttcccaaacgaag |
5350286 |
T |
|
| Q |
349 |
attagccactgttaaacggcggtggatacttcgtatctataacatggttatatata--aaataatatcagttt--gtgacagtaattaacaattcatctg |
444 |
Q |
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| T |
5350285 |
attagccactgttaaacggcggtggatactttgtatctataacatggttatatatataaaataatatcagtttatgtgacaataattaacaattcatctg |
5350186 |
T |
|
| Q |
445 |
ttccttctttcttgtctaaaaggaatactatcaagcctctgcaagggagctagtaagaattaatggaacaacaaaagcaccagttgtgagttatacaact |
544 |
Q |
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| T |
5350185 |
ttccttctttcttgtctaaaaggaatactatcaagcctctgcaagggagctagtaagaattaatggaacaacaaaagcaccagttgtgagttatacaact |
5350086 |
T |
|
| Q |
545 |
gagacatcagcaggagtggtcacagtaagagccttcaagatggtggacagattcttcaaaaacttccaacatctagttgacacagatgctgcactattct |
644 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5350085 |
gagacatcagcaggagtggtcacagtgagagcctttaagatgatggacagattcttcaaaaatttccaacatctagttgacacagatgctgcactattct |
5349986 |
T |
|
| Q |
645 |
tgcataccaatgctgctttggagtggttacaatcaagaatggatatacttcaaaattttatcctttttacagcagcttgtctatttgtgtttcttcccat |
744 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5349985 |
tgcataccaatgctgctttggagtggttacaatcaaggatggatatacttcaaaattttatcctttttacagcagcttgtctatttgtgtttcttcccat |
5349886 |
T |
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| Q |
745 |
gggatcaattattccaggtaacactaaaatcatgatgtatttttctacatttagtgcccatttatg |
810 |
Q |
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| T |
5349885 |
gggatcaattattccaggtaacattaaaaccatgatatattattctacattttgtgaccatttatg |
5349820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 463 - 608
Target Start/End: Complemental strand, 5280946 - 5280801
Alignment:
| Q |
463 |
aaaggaatactatcaagcctctgcaagggagctagtaagaattaatggaacaacaaaagcaccagttgtgagttatacaactgagacatcagcaggagtg |
562 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||| || | || |||||||| || |||||||||||| ||| || | || ||||||||||| |||||| |
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| T |
5280946 |
aaagcaatactatcaagccgctgcaagggaactaatacggatcaatggaaccaccaaagcaccagttatgaattttgcagctgagacatcacttggagtg |
5280847 |
T |
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| Q |
563 |
gtcacagtaagagccttcaagatggtggacagattcttcaaaaact |
608 |
Q |
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|| || |||||||| ||||| ||||| |||||||| |||||||||| |
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| T |
5280846 |
gttactgtaagagcattcaacatggtagacagatttttcaaaaact |
5280801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 608
Target Start/End: Complemental strand, 5288959 - 5288814
Alignment:
| Q |
463 |
aaaggaatactatcaagcctctgcaagggagctagtaagaattaatggaacaacaaaagcaccagttgtgagttatacaactgagacatcagcaggagtg |
562 |
Q |
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|||| |||| ||||||||| ||||||| || ||| || | || || ||||| || ||||| ||||| ||| || | || ||||||||||| ||||| |
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| T |
5288959 |
aaagcaatattatcaagccactgcaagtgaactaatacggatcaacggaaccaccaaagctccagtcatgaattttgcagctgagacatcacttggagta |
5288860 |
T |
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| Q |
563 |
gtcacagtaagagccttcaagatggtggacagattcttcaaaaact |
608 |
Q |
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| T |
5288859 |
gttacagtaagatcattcaacatggtagacagatttttcaaaaact |
5288814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 12269191 - 12269229
Alignment:
| Q |
355 |
cactgttaaacggcggtggatacttcgtatctataacat |
393 |
Q |
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| T |
12269191 |
cactgttaaacggcggtggatacttcttacctataacat |
12269229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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