View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11534_high_7 (Length: 471)
Name: NF11534_high_7
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 25443502 - 25443954
Alignment:
| Q |
1 |
gacaattgctgagacggaaaaggagaatttaagtcaagcttggggaatatcaagtcagcacaaaggcgaggtacagagaatccaccgccgttattagaat |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
25443502 |
gacaattgctgagatggaaaaggagaatttaagtcaagcttagggaagatcaagtcagcacaaatgcgaggtacagagaatccaccaccgttattagaat |
25443601 |
T |
|
| Q |
101 |
cagatttcgtaagagtctttacgaaggaaacaaacttatcaccaccgtcgtcttcttcgtcaacaacctcaggaagttcttgtccttcagttaccggact |
200 |
Q |
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| T |
25443602 |
cagattttgtaagagtctttacgaaggaaacaaacttatcaccaccgtcgtcttcttcgtcaacaacctcaggaaattcttgtccttcagttaccggact |
25443701 |
T |
|
| Q |
201 |
gagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacggctgtgatgatacaaggaaaggaaggaccataaccatcaataacg |
300 |
Q |
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| T |
25443702 |
gagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacggctgtgatgatacaaggaaaggaaggaccatatccatcaataacc |
25443801 |
T |
|
| Q |
301 |
gtgattgtttgagggttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaactttagaacgtacctttggaacattcaccgatggac |
400 |
Q |
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| T |
25443802 |
gtgattgtttgagggttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaactttagaacgtacctttggaacgttcaccgatggac |
25443901 |
T |
|
| Q |
401 |
cggcacatgtctgccagattttggatttcacgcggcgtggcggaggtacagac |
453 |
Q |
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| T |
25443902 |
cggcacatgtctgccaaattttggatttcacgcggcgtggcggagggacagac |
25443954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 35273130 - 35273073
Alignment:
| Q |
315 |
gttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaactttagaa |
372 |
Q |
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| T |
35273130 |
gttaggggaagggcaggcatgttccaagtgacctagtggaaagtaaaaaacttgagaa |
35273073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 26099248 - 26099323
Alignment:
| Q |
191 |
ttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacggctgtgatgat |
266 |
Q |
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| T |
26099248 |
ttacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgat |
26099323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 25225019 - 25224950
Alignment:
| Q |
187 |
tcagttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacgg |
256 |
Q |
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| T |
25225019 |
tcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacgg |
25224950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 25289175 - 25289106
Alignment:
| Q |
187 |
tcagttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacgg |
256 |
Q |
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| T |
25289175 |
tcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacgg |
25289106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 25728229 - 25728298
Alignment:
| Q |
187 |
tcagttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacgg |
256 |
Q |
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| T |
25728229 |
tcagttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacgg |
25728298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 26099380 - 26099472
Alignment:
| Q |
332 |
catgttccaagtgaccatgtgggaagtaataaactttagaacgtacctttggaacattcaccgatggaccggcacatgtctgccagattttgg |
424 |
Q |
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| T |
26099380 |
catgttttaagtgaccttgtgggaagtagtaaactttagaatgtagcttcggaatcttgactgaggctccgacacatttctgccagattttgg |
26099472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 371
Target Start/End: Complemental strand, 25618132 - 25617951
Alignment:
| Q |
190 |
gttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacggctgtgatgatacaaggaaaggaaggaccataac |
289 |
Q |
| |
|
||||| ||| |||| |||| |||||||||||| ||||| |||| ||||||||| |||||||| |||| | |||||| || |||| ||| |||| |||| |
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| T |
25618132 |
gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatggatggacggtaac |
25618033 |
T |
|
| Q |
290 |
catcaataacggtgattgtttgagggttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaactttaga |
371 |
Q |
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| T |
25618032 |
gattaataatgttgattgtgtgatcgttaggagaagtacaagcatgttctaagtgaccttttggaaagtagtagactttaga |
25617951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 25618294 - 25618195
Alignment:
| Q |
34 |
tcaagcttggggaatatcaagtcagcacaaaggcgaggtacagagaatccaccgccgttattagaatcagatttcgtaagagtctttacgaaggaaacaa |
133 |
Q |
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| T |
25618294 |
tcaagcttcggtaagatcaagtcagcgcaagcacgaggtacagagaatccaatggcgttgttagaatcagattttgtgagaatcttcacaaaagaaacaa |
25618195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 560839 - 560760
Alignment:
| Q |
190 |
gttaccggactgagtagcaatttggcgaagacctcatcggtgtgaggatcagctaggagatcaacggctgtgatgataca |
269 |
Q |
| |
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||||| ||| |||| |||| ||| |||||||||||||| ||||||||||| || ||||||||||| || | ||||||||| |
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| T |
560839 |
gttacaggagtgagcagcagtttagcgaagacctcatcagtgtgaggatcggcgaggagatcaacagcggagatgataca |
560760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 8823390 - 8823314
Alignment:
| Q |
67 |
cgaggtacagagaatccaccgccgttattagaatcagatttcgtaagagtctttacgaaggaaacaaacttatcacc |
143 |
Q |
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| T |
8823390 |
cgaggtacggagaatgcaccaccgttattagcatcagatagggttagagtctttccagaggaaacaaactcatcacc |
8823314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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