View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11534_low_1 (Length: 1016)

Name: NF11534_low_1
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11534_low_1
NF11534_low_1
[»] chr6 (4 HSPs)
chr6 (21-1006)||(11191002-11191986)
chr6 (318-401)||(10084609-10084692)
chr6 (560-606)||(11191402-11191448)
chr6 (339-422)||(34374328-34374411)
[»] chr3 (2 HSPs)
chr3 (828-1004)||(368175-368351)
chr3 (313-383)||(3064246-3064316)
[»] chr2 (5 HSPs)
chr2 (47-147)||(10308809-10308909)
chr2 (320-421)||(32162488-32162589)
chr2 (941-1006)||(32163177-32163242)
chr2 (236-316)||(10311454-10311534)
chr2 (169-218)||(10309086-10309135)
[»] chr4 (7 HSPs)
chr4 (465-559)||(55564019-55564113)
chr4 (854-991)||(22691791-22691928)
chr4 (313-418)||(10494392-10494497)
chr4 (836-937)||(37633809-37633910)
chr4 (689-746)||(55563295-55563352)
chr4 (594-647)||(55563582-55563635)
chr4 (644-688)||(55563454-55563498)
[»] chr8 (3 HSPs)
chr8 (818-929)||(30440961-30441072)
chr8 (169-218)||(38432096-38432145)
chr8 (353-422)||(2688645-2688714)
[»] chr5 (1 HSPs)
chr5 (318-420)||(18251860-18251962)
[»] chr1 (1 HSPs)
chr1 (750-792)||(43375006-43375048)


Alignment Details
Target: chr6 (Bit Score: 962; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 962; E-Value: 0
Query Start/End: Original strand, 21 - 1006
Target Start/End: Complemental strand, 11191986 - 11191002
Alignment:
21 gattgatccagttgaattttcttaaaaccagaatcagtgccctctgttgtcttggcagaatcattgctttgaccttccaattgatgcaaaagttttaatg 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191986 gattgattcagttgaattttcttaaaaccagaatcagtgccctctgttgtcttggcagaatcattgctttgaccttccaattgatgcaaaagttttaatg 11191887  T
121 ataaagagcgtccaataccttcataaccattaatagtagaagacaagaaatagcagcagcttcatcaacgaccaataattcaacttgcgagagcttttgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191886 ataaagagcgtccaataccttcataaccattaatagtagaagacaagaaatagcagcagcttcatcaacgaccaataattcaacttgcgagagcttttgt 11191787  T
221 ttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcctgg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
11191786 ttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatcgtgg 11191687  T
321 tactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttctt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191686 tactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttctt 11191587  T
421 cgacaacagctagctattgaagatccgatgattttagtagcggggatacaaaatcattgaatcgataagtgacttccaatggttttaatcgctccacata 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
11191586 cgacaacagctagctattgaagatccgatgattttagtagcggggatacaaaatcattgaatc-ataagtgacttccaatggttttaatcgctccacata 11191488  T
521 caatttcttcaagccatctattattgatgtcattgcactaaccgtaaagaagttacctcttagtaagaggtaacttctttacggtttttgaagcaactgg 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
11191487 caatttcttcaagccatctattattgatgtcattgcactaaccgtaaagaagttacctcttactaagaggtaacttctttacggtttttgaagcaactgg 11191388  T
621 tggcaaaggctgaggctgaccagtaccaaatacatcaggttgggcatttattgtcgaactctctttatctgctactaatacatcaattacttccatgaca 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191387 tggcaaaggctgaggctgaccagtaccaaatacatcaggttgggcatttattgtcgaactctctttatctgctactaatacatcaattacttccatgaca 11191288  T
721 ggaagtttgatctttttattgtcaacgccttcttattttccatatcagcatcatgcgataatttcccaccatatccgagatccttactcaacttctcctt 820  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191287 ggaagtttgatctttttattgtcaacgccttcttattttccatatcagcatcatgcgataatttcccaccatatccgagatccttactcaacttctcctt 11191188  T
821 catattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagaga 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191187 catattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagaga 11191088  T
921 gagaatctatcgcgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 1006  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11191087 gagaatctatcccgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 11191002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 10084692 - 10084609
Alignment:
318 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacat 401  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||    
10084692 tggtaccagatgaccaacccgtgagtggtgacaatttttgtaaaataacataatcaaatggttggtcgatacctgtaacaacat 10084609  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 560 - 606
Target Start/End: Original strand, 11191402 - 11191448
Alignment:
560 aaccgtaaagaagttacctcttagtaagaggtaacttctttacggtt 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
11191402 aaccgtaaagaagttacctcttagtaagaggtaacttctttacggtt 11191448  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 34374328 - 34374411
Alignment:
339 tgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 422  Q
    |||||||||  |||||||||||| ||| |||||||||| ||||||||||| || || |||||  ||||||||||||||||||||    
34374328 tgagtggtgtaaatttttgtaaagtaatataatcagatggttggtcgatatctgtagcaacacgtcgatccggtggtttcttcg 34374411  T

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Target: chr3 (Bit Score: 105; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 828 - 1004
Target Start/End: Original strand, 368175 - 368351
Alignment:
828 tcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatc 927  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||||| |||| |||||| ||||| || |||||||| ||||    
368175 tcatcataaccacccttcaccggcgtttcatacatccgtggcgacgagagctgattcctctccaatttttcaattgaaacaagtggcgagagagacaatc 368274  T
928 tatcgcgagagttaaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctc 1004  Q
    || |||||||||||||||||| |||||| | |||||| |||||||||||||||  ||||||||||||||||||||||    
368275 taccgcgagagttaaatctttcaagcatcaactgtttcatccttctccaagttcgaatagggttttttctttgtctc 368351  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 3064246 - 3064316
Alignment:
313 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggt 383  Q
    |||| ||||||||| |||||||||| ||||| |||  |||||||||||| ||||||||||| || ||||||    
3064246 aatcgtggtactaggtgaccaatccttgagttgtggaaatttttgtaaagtaacataatcaaatggttggt 3064316  T

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Target: chr2 (Bit Score: 85; Significance: 6e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 10308809 - 10308909
Alignment:
47 accagaatcagtgccctctgttgtcttggcagaatcattgctttgaccttccaattgatgcaaaagttttaatgataaagagcgtccaataccttcataa 146  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
10308809 accagaatcagtgccctctgttgccttggcagaatcgttgctttgaccttccagttgatgcaaaagttttaatgataaagagcgtccagtaccttcataa 10308908  T
147 c 147  Q
    |    
10308909 c 10308909  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 32162488 - 32162589
Alignment:
320 gtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttct 419  Q
    |||||||||||||||||||||||| |||  ||||| |||||| |||||||||||||| |||||| |||| |||||||||||  |||||||  ||||||||    
32162488 gtactagatgaccaatccatgagtagtgggaatttctgtaaattaacataatcagatggttggttgatacctataacaacacgtcgatccaatggtttct 32162587  T
420 tc 421  Q
    ||    
32162588 tc 32162589  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 941 - 1006
Target Start/End: Original strand, 32163177 - 32163242
Alignment:
941 aaatcttttaagcataagctgttttatccttctccaagttgaaatagggttttttctttgtctctg 1006  Q
    ||||||||||||||| | |||||| |||||||| ||||||  |||||||||||||||||| |||||    
32163177 aaatcttttaagcatcaactgtttcatccttctgcaagttcgaatagggttttttctttgcctctg 32163242  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 10311454 - 10311534
Alignment:
236 cgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatc 316  Q
    ||||||||||||||||||||| ||||| || | || |||||||| ||||  |||||||||||| |||  ||||||||||||    
10311454 cgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatc 10311534  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 10309086 - 10309135
Alignment:
169 aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt 218  Q
    |||||| |||||||||||||| ||||| | ||||||||| ||||||||||    
10309086 aatagcggcagcttcatcaactaccaacagttcaacttgtgagagctttt 10309135  T

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Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 465 - 559
Target Start/End: Complemental strand, 55564113 - 55564019
Alignment:
465 gatacaaaatcattgaatcgataagtgacttccaatggttttaatcgctccacatacaatttcttcaagccatctattattgatgtcattgcact 559  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
55564113 gatacaaaatcattgaatcgataagtgacctccaatggttttaaccgctccacatacaatttcttcaatccatctattattgatgtcactgcact 55564019  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 854 - 991
Target Start/End: Complemental strand, 22691928 - 22691791
Alignment:
854 ttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatctatcgcgagagttaaatcttttaagc 953  Q
    |||||||||||| ||||||| ||| ||||||||| |||| |||| |||||| |||||||| |||||||| |||||| |||||||||||||||||| || |    
22691928 ttgatacatccgtggcgacgagagttgcttcctcaccaatttttcaattgaaacaagcggcgagagagacaatctaccgcgagagttaaatctttcaatc 22691829  T
954 ataagctgttttatccttctccaagttgaaatagggtt 991  Q
    || | |||||| |||||||||||||||  |||||||||    
22691828 atcaactgtttcatccttctccaagttcgaatagggtt 22691791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 313 - 418
Target Start/End: Complemental strand, 10494497 - 10494392
Alignment:
313 aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggt 412  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||| |||||  ||||||| ||    
10494497 aatcatggtactagatgaccaatccgtgagtggtgtgaatttttgtaaagtaacataatcagatggttggtcgatacctatagcaacacgtcgatccagt 10494398  T
413 ggtttc 418  Q
    ||||||    
10494397 ggtttc 10494392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 836 - 937
Target Start/End: Complemental strand, 37633910 - 37633809
Alignment:
836 accacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgagagagagaatctatcgcga 935  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||  ||||||| |||||||| |||||| |||||    
37633910 accacccttcactggcgtttgatacatccgcggcgacgagagctgcttcctctccaaattctcaattgaagcaagcggcgagagagacaatctaccgcga 37633811  T
936 ga 937  Q
    ||    
37633810 ga 37633809  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 689 - 746
Target Start/End: Complemental strand, 55563352 - 55563295
Alignment:
689 ctgctactaatacatcaattacttccatgacaggaagtttgatctttttattgtcaac 746  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
55563352 ctgctactaatacatcaattccttccatgactggaagtttgatcttttcattgtcaac 55563295  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 594 - 647
Target Start/End: Complemental strand, 55563635 - 55563582
Alignment:
594 cttctttacggtttttgaagcaactggtggcaaaggctgaggctgaccagtacc 647  Q
    ||||||||| | |||||||||||||||||| |||||| ||||||||||||||||    
55563635 cttctttacagattttgaagcaactggtggaaaaggccgaggctgaccagtacc 55563582  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 688
Target Start/End: Complemental strand, 55563498 - 55563454
Alignment:
644 taccaaatacatcaggttgggcatttattgtcgaactctctttat 688  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
55563498 taccaaataaatcaggttgggcatttattgtcgaactcgctttat 55563454  T

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Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 818 - 929
Target Start/End: Complemental strand, 30441072 - 30440961
Alignment:
818 cttcatattctcatcataaccacccttcaccgacgtttgatacatccgcggcgacgggagctgcttcctctccaaatttttaattgatacaagcggtgag 917  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||| ||||| |||| | |||||||||| |||||| | ||||||  ||    
30441072 cttcatatcctcatcataaccacccttcatcgacatttgatacatccgcggcaacgagagctacttcatatccaaattttcaattgaaaaaagcggcaag 30440973  T
918 agagagaatcta 929  Q
    ||||| ||||||    
30440972 agagacaatcta 30440961  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 38432096 - 38432145
Alignment:
169 aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt 218  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||||    
38432096 aatagcagctgcttcatcaacaaccaataattcaacttgcgaaagctttt 38432145  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 2688714 - 2688645
Alignment:
353 ttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggtttcttcg 422  Q
    ||||||||| ||||||||||  || ||||||||||| || || |||||  ||||||| ||||||||||||    
2688714 ttttgtaaagtaacataatcgtatggttggtcgatatctgtagcaacacgtcgatccagtggtttcttcg 2688645  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 18251962 - 18251860
Alignment:
318 tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatccggtggttt 417  Q
    |||||| ||||||||||||| | |||||||  |||||||||||| ||| |||||||||| |||||| |||| || || || || |||||||| |||||||    
18251962 tggtacgagatgaccaatccgtaagtggtgggaatttttgtaaagtaatataatcagatggttggttgatacctgtagcatcacatcgatccagtggttt 18251863  T
418 ctt 420  Q
    |||    
18251862 ctt 18251860  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 750 - 792
Target Start/End: Original strand, 43375006 - 43375048
Alignment:
750 ttcttattttccatatcagcatcatgcgataatttcccaccat 792  Q
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43375006 ttcttcttttccatatcagcatcatgcggtaatttctcaccat 43375048  T

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