View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11534_low_10 (Length: 368)
Name: NF11534_low_10
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 48802247 - 48801907
Alignment:
| Q |
20 |
gcatttgacctaaaataagcaaaaaagttgaatttattattgagaaaataaattaaaactcaattgctgaggtgctagttttatataaggagttctatgt |
119 |
Q |
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| T |
48802247 |
gcatttgacctaaaataagcaaaaaatttgaatttattattgagaaaataaattaaaactcaattgctgaggtgctagttttatataaggagttctatgt |
48802148 |
T |
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| Q |
120 |
gtttatgttttactcacatgtgtatgaagtttaactccttccaacttctgctatttttgcagaggtgaaaactgctgttgcttccttgactgccacaaag |
219 |
Q |
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| T |
48802147 |
gtttatgttttactcacatgtgtatgaagtttaactccttccaacttctgctatttttgcagaggtgaaaactgctgttgcttccttgactgccacaaag |
48802048 |
T |
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| Q |
220 |
tctatttctaaggtaagaatctcattgttagtgac--tggttgattaatggctaattaacttcattatgctgcgtattagaaatcatttattgtgaattg |
317 |
Q |
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| T |
48802047 |
tctatttctaaggtaagaatctcattgttagtgactatggttgattaatggctaattaacttcattatgctgcgtattagaaatcattgattgtgaattg |
48801948 |
T |
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| Q |
318 |
atgttaaaattttatcttgttctggtactttcttgttcatc |
358 |
Q |
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| T |
48801947 |
atgttaaaattttatcttgttctggtactttcttgttcatc |
48801907 |
T |
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