View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11534_low_12 (Length: 348)
Name: NF11534_low_12
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_low_12 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 47257029 - 47257365
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257029 |
aagaaaagcaaaagctcaagttacagagaagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
47257128 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257129 |
atggtgtcagattggactcgtgctaagttctcagaagtgaatttcggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
47257228 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
47257229 |
ttgggggaacctttcttgtcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgttaa |
47257328 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaattatcct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257329 |
ggagttagatgatatgcttggtaaccaaaattatcct |
47257365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 47242902 - 47243238
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
47242902 |
aagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaactggaagaacttgt |
47243001 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| | | |||||||||| || |||||||||||||||||||| || |
|
|
| T |
47243002 |
atagtgtcggattggactcgtgctaatttctcagaagtgaatttcggatggggtgaaacaatatatggtggagtagtaaaaggtggaattggatcttatc |
47243101 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
|||| ||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47243102 |
ttggaggaacctatattgtcccgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgccccctgaagatatgaagaggtttgctaa |
47243201 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaattatcct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47243202 |
agagttagatgatatgcttggtaaccaaaattatcct |
47243238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 47283771 - 47284101
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||||||| | |||| | ||| |
|
|
| T |
47283771 |
aagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacagtaagatcgtgt |
47283870 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
| || ||||| | |||||||||||||| | ||||||||||||| ||||||||||| || ||||||||||||| | ||||||||| |||| |||| | |
|
|
| T |
47283871 |
gttgtatcagacttgactcgtgctaagtacgcagaagtgaatttcggatggggtgaggcggtgtatggtggagtggtaaaaggtggggctggacctttac |
47283970 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
||| | ||| | | | || | |||||||||||| ||||||||||||| |||||||||| ||||| ||| | |||||| |||||||||||||||| | |
|
|
| T |
47283971 |
ctggagcaacgtatataatcccacataagaatgcagaaggagaagaaggtttaatattactaattttcttaacctctgaagttatgaagaggtttgctga |
47284070 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaat |
342 |
Q |
| |
|
||||||||| | ||| ||||||| |||||| |
|
|
| T |
47284071 |
agagttagataagatgtttggtaatcaaaat |
47284101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 47299049 - 47298713
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||| || |||| ||| ||||||||||||||||||| ||||||||||||| | ||| | ||| |
|
|
| T |
47299049 |
aagaaaattaaaagctgaagttacagaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgt |
47298950 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
|| | ||||||| ||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
47298949 |
attatttcagatttgactcgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaccttttc |
47298850 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
||| | ||||| | | || | |||||||| ||||||||||||| || || ||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
47298849 |
ctggagcaacctatatcgtcccatataagaatataaaaggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaa |
47298750 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaattatcct |
348 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
47298749 |
agagttggatgagatgcttggtaaccaaaatcatcct |
47298713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 47292442 - 47292106
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |||||||| || |||| ||| ||||||||||||||||||| ||||||||||||| | ||| | ||| |
|
|
| T |
47292442 |
aagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgt |
47292343 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
| | ||||||| ||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |||| | |||| |
|
|
| T |
47292342 |
gttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaacatttc |
47292243 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
||| ||||| | | || | |||||||| ||| ||||||||| || || ||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
47292242 |
ctggatcaacctatatcgtcccatataagaatataaatggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaa |
47292143 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaattatcct |
348 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47292142 |
agagttggatgagatgcttggtaaccaaaattatcct |
47292106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 47279178 - 47279508
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
47279178 |
aagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacaataagatcttgt |
47279277 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
| || ||||| | |||||||||||||| | ||||||||||||||||||||||||| || ||||||||||| | | ||| ||| || |||| | |
|
|
| T |
47279278 |
gttgtatcagacttgactcgtgctaagtacgcagaagtgaattttggatggggtgaggcggtgtatggtggggtggtaaattgtgtggccgggcctttac |
47279377 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
| | | ||| ||| | || | |||||||||||| ||||||||||||| || ||||||| ||||| ||| | |||||| |||||||||||||||| | |
|
|
| T |
47279378 |
ctagagcaacgtttatcatcccacataagaatgcagaaggagaagaaggtttgatattactaattttcttaacctctgaagttatgaagaggtttgctga |
47279477 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaat |
342 |
Q |
| |
|
||||||||| | ||| |||||||||||||| |
|
|
| T |
47279478 |
agagttagataagatgtttggtaaccaaaat |
47279508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 47267806 - 47268138
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||| ||||||| ||||||||||||| || ||||| || | |||||| ||||||||||||| || || ||||||||||||| ||| | ||| |
|
|
| T |
47267806 |
aagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaagagcggtgtttatttacaactataaggtcttgt |
47267905 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
| || |||||| |||||| ||||| ||||||| |||||||||||||||| || |||||||||||||| |||||| |||| ||| |||||| |
|
|
| T |
47267906 |
gttgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttc |
47268005 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
||| | | ||| | | || | |||||||||| | ||||||||||||| || ||||||| | |||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
47268006 |
ctggagcagcctatatcatcccacataagaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaa |
47268105 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaatta |
344 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |
|
|
| T |
47268106 |
agagttagatgagatgcttggtaaacaaaatta |
47268138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 32731569 - 32731905
Alignment:
| Q |
12 |
aagaaaagcaaaagctcaagttacagaggagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgt |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
32731569 |
aagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaaccggaagaacttgt |
32731668 |
T |
|
| Q |
112 |
atggtgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||| | |||||||||||| || |||||||||||||||||||| || |
|
|
| T |
32731669 |
atggtgtcagattggactcgtgctaatttatcagaagtgaatttcggatggggtgaaacaatgtatggtggagtagtaaaaggtggaattggatcttatc |
32731768 |
T |
|
| Q |
212 |
ttgggggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaa |
311 |
Q |
| |
|
|||| ||||||| | || || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32731769 |
ttggaggaacctatattgtcccgcataagaatgcaaaaggagaagaagggttaatatttccaatttgcttgccccctgaagatatgaagaggtttgctaa |
32731868 |
T |
|
| Q |
312 |
ggagttagatgatatgcttggtaaccaaaattatcct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32731869 |
agagttagatgatatgcttggtaaccaaaattgtcct |
32731905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 338
Target Start/End: Original strand, 20519682 - 20519904
Alignment:
| Q |
116 |
tgtcagattggactcgtgctaagttctcagaagtgaattttggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttcttgg |
215 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||| ||| ||| ||||| ||| |
|
|
| T |
20519682 |
tgtcagatttgacacgtgctaagttcagagaagtgaattttggatggggtgaggcgaagtatggtggagttgcaaaagctggggctgggggttttcgtgg |
20519781 |
T |
|
| Q |
216 |
gggaacctttcttttcacgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgctaaggag |
315 |
Q |
| |
|
| |||| | || || | ||||||||| ||||| |||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
20519782 |
agcaaccatcattgtcccacataagaattcaaaacaagaaaaaggtttaatattaccaatttctttgccttatgaagatatgaagaggtttgctaaagag |
20519881 |
T |
|
| Q |
316 |
ttagatgatatgcttggtaacca |
338 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
20519882 |
ttagatgagatgcttggtaacca |
20519904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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