View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11534_low_4 (Length: 515)
Name: NF11534_low_4
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11534_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 23666888 - 23667254
Alignment:
| Q |
1 |
tatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtctcaaagaagaaacatatcg |
100 |
Q |
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| T |
23666888 |
tatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtctcaaagaagaaacatatcg |
23666987 |
T |
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| Q |
101 |
aaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaatgaggctcagaaattcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23666988 |
aaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaatgaggctcagaaattcatg |
23667087 |
T |
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| Q |
201 |
catgttctactttcatggatatgtgaactgttcaactgttaca-acccctttcaacagtgttttttaatcataatcgttcaaccttcaacctctatagtt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667088 |
catgttctactttcatggatatgtgaactgttcaactgttacatacccctttcaacagtgttttttaatcataatcgttcaaccttcaacctctatagtt |
23667187 |
T |
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| Q |
300 |
ttgtattaatccataatatgtagtatcaaaattataaggacgttattattcctttgtttcatttgca |
366 |
Q |
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| T |
23667188 |
ttgtattaatccataatatggagtatcaaaattataaggacgttattattcctttgtttcatttgca |
23667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 23667314 - 23667387
Alignment:
| Q |
426 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctag |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667314 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctag |
23667387 |
T |
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