View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11534_low_6 (Length: 489)

Name: NF11534_low_6
Description: NF11534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11534_low_6
NF11534_low_6
[»] chr1 (1 HSPs)
chr1 (18-475)||(26273559-26274018)
[»] chr7 (3 HSPs)
chr7 (309-393)||(14088688-14088772)
chr7 (309-393)||(14398706-14398790)
chr7 (347-398)||(36282450-36282501)
[»] chr3 (4 HSPs)
chr3 (311-398)||(20610006-20610093)
chr3 (347-398)||(37382976-37383027)
chr3 (347-398)||(43135207-43135258)
chr3 (332-398)||(17036199-17036265)
[»] chr2 (2 HSPs)
chr2 (412-463)||(19952478-19952529)
chr2 (307-393)||(19952543-19952629)
[»] chr6 (1 HSPs)
chr6 (330-383)||(4231756-4231809)
[»] chr5 (2 HSPs)
chr5 (337-393)||(1279773-1279829)
chr5 (315-383)||(42615062-42615130)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 26274018 - 26273559
Alignment:
Q  18 gttatcataatggttaaggtaatggaaagatatatgtaccaaaaattaggtacaattactagcaaggttcctacaaaaataaggtctaatgtaatgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  26274018 gttatcataatggttaaggtaatggaaagatatatgtaccaaaaattaggtacaattactagcaaggttcctacaaaaataaagtcaaatgtaatgaggg 26273919  T
Q  118 attgcttctcaagatattttttgatgtgcatgtttagttgtcatgggagacacacaaaaatgatatttatttttatttttgagggaatataaattgatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26273918 attgcttctcaagatattttttgatgtgcatgtttagttgtcatgggagacacacaaaaatgatatttatttttatttttgagggaatataaattgatat 26273819  T
Q  218 attgatgagttaacattaaattatat----nnnnnnnntgctacacattctcgtgcacccttcagctttagactaaaatacctcaccatatgcggttcca 313  Q
    ||||||||||||||||||||||||||            ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26273818 attgatgagttaacattaaattatataaaaaaaaaaaatgcgacacattctcgtgcacccttcagctttagactaaaatacctcaccacatgcggttcca 26273719  T
Q  314 ccacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaaccaacttnnnnnnnnnnnnntt 413  Q
    ||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||    
T  26273718 ccatccgacgaccctggacactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaaccaactt--aaaaaaaaaaatt 26273621  T
Q  414 aggcaaattctaaaaattttcacacgcgcacagcagaaacacgttcttctccagctctctgc 475  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  26273620 aggcaaattctgaaatttctcacacgcgcacagcagaaacacgttcttctccaactctctgc 26273559  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 14088688 - 14088772
Alignment:
Q  309 ttccaccacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaacc 393  Q
    |||||||||||| | |||| ||||||| |||||  || ||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  14088688 ttccaccacccggcgaccccgggcacttgcccgggctcaatcgatactttctttatatatggctcaacccattagcccattaacc 14088772  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 14398706 - 14398790
Alignment:
Q  309 ttccaccacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaacc 393  Q
    |||||||||||| | |||| ||||||| |||||  || ||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  14398706 ttccaccacccggcgaccccgggcacttgcccgggctcaatcgatactttctttatatatggctcaacccattagcccattaacc 14398790  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 36282501 - 36282450
Alignment:
Q  347 aatcgatactttctttatatatggcccaacccaatagccaattaaccaactt 398  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  36282501 aatcgatactttcttcatatttggcccaatccaatagcccattaacccactt 36282450  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 20610006 - 20610093
Alignment:
Q  311 ccaccacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaaccaactt 398  Q
    |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||| | |  || |||||||||| ||||||| ||||    
T  20610006 ccaccacccgacgaccccgggcactcgcccgagcttaatcgatactttctttatattttgttcagcccaatagcccattaacccactt 20610093  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 37383027 - 37382976
Alignment:
Q  347 aatcgatactttctttatatatggcccaacccaatagccaattaaccaactt 398  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||| ||||    
T  37383027 aatcgatactttctgtatatatggtccaacccaatagcccattaacccactt 37382976  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 43135207 - 43135258
Alignment:
Q  347 aatcgatactttctttatatatggcccaacccaatagccaattaaccaactt 398  Q
    |||||||||||||||||||||||||||||  |||||| | ||||||| ||||    
T  43135207 aatcgatactttctttatatatggcccaatgcaatagtccattaacccactt 43135258  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 17036199 - 17036265
Alignment:
Q  332 cactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaaccaactt 398  Q
    ||||||||||  || ||||||| |||||||||||| | | |||||||||||||| ||||||| ||||    
T  17036199 cactcgcccgggctcaatcgattctttctttatatttcggccaacccaatagcctattaacccactt 17036265  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 19952529 - 19952478
Alignment:
Q  412 ttaggcaaattctaaaaattttcacacgcgcacagcagaaacacgttcttct 463  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  19952529 ttaggcaaattctaaaatttctcacacgcgcacaacagaaacacgttcttct 19952478  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 393
Target Start/End: Complemental strand, 19952629 - 19952543
Alignment:
Q  307 ggttccaccacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaacc 393  Q
    |||| ||||||||| | ||||  | |||||||| | ||| |||||||| |||||||||||||| |||| | |||||||| |||||||    
T  19952629 ggtttcaccacccggcgaccccagacactcgcctggactcaatcgatattttctttatatatgacccacctcaatagcccattaacc 19952543  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 4231809 - 4231756
Alignment:
Q  330 ggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatag 383  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||| |||||    
T  4231809 ggcactcgcccgaactcaatcgatactttctttatatttggcccaaccaaatag 4231756  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 1279773 - 1279829
Alignment:
Q  337 gcccgtacttaatcgatactttctttatatatggcccaacccaatagccaattaacc 393  Q
    ||||| ||| ||||||||||||||||||||||| |||||| |||||||| |||||||    
T  1279773 gcccggactcaatcgatactttctttatatatgacccaactcaatagcccattaacc 1279829  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 42615130 - 42615062
Alignment:
Q  315 cacccgcctaccctgggcactcgcccgtacttaatcgatactttctttatatatggcccaacccaatag 383  Q
    |||||| | |||| || |||||| ||| ||| |||||||||||||||||||| |||  |||||||||||    
T  42615130 cacccggcgaccccggacactcgtccggactcaatcgatactttctttatatttggttcaacccaatag 42615062  T

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