View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11535_high_5 (Length: 338)
Name: NF11535_high_5
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11535_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 44729612 - 44729920
Alignment:
| Q |
11 |
cagaagtgccaatataacataactaacaattaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaa |
110 |
Q |
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| T |
44729612 |
cagaagtgccaatataacataactaacaattaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaa |
44729711 |
T |
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| Q |
111 |
acttgtaaggaataaccaaccagatatctttctcttaaccttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactc |
210 |
Q |
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| T |
44729712 |
acttgtaaggaataaccaaccagatatctttctcttaaccttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactc |
44729811 |
T |
|
| Q |
211 |
aaattcaaatactctgctctttcctccatcatttctggcaaaaactcacaaaaattaaacctctcttcttcatttatctgcaaactagtttcatattctc |
310 |
Q |
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| T |
44729812 |
aaattcaaatactctgctctttcctccatcatttctggcaaaaactcacaaaaattaaacctctcttcttcatttatctgcaaactagtttcaacttctc |
44729911 |
T |
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| Q |
311 |
caatttcaa |
319 |
Q |
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| T |
44729912 |
caatttcaa |
44729920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 39084314 - 39084251
Alignment:
| Q |
151 |
ttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
214 |
Q |
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| T |
39084314 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
39084251 |
T |
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