View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11535_high_6 (Length: 325)
Name: NF11535_high_6
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11535_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40453571 - 40453351
Alignment:
| Q |
1 |
cctcctcccgtcaaaactctctgcaactactgttgttgcgatcccaccttcctcagcgcgcgctctttctccggaacccgatactaccaccaccgttttc |
100 |
Q |
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| T |
40453571 |
cctcctcccgtcaaaactctctgcaactactgttgttgcgatcccaccttcctcagcgcgcgctctttctccggaacccgatactaccaccaccgttttc |
40453472 |
T |
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| Q |
101 |
ccgccaaaaccgtctcccactcgcacccgtccgggtttccaatcaatccgaaaatgacgacggttttctcctcgaggacgttccacacctcaccaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453471 |
ccgccaaaaccgtctcccactcgcacccgtccgggtttccaatcaatccgaaaatgacgacggttttctcctcgaggacgttccacacctcaccaatttc |
40453372 |
T |
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| Q |
201 |
cttcccaatctgccggtactg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40453371 |
cttcccaatctgccggtactg |
40453351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 40453308 - 40453259
Alignment:
| Q |
263 |
aatgacactaacacca-gacacaataaaaatttgaaaaaatgaatgtgtt |
311 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
40453308 |
aatgacactaacaccaagacacaatataaatttgaaaaaatgaatgtgtt |
40453259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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