View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11535_high_8 (Length: 255)
Name: NF11535_high_8
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11535_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 2177076 - 2176848
Alignment:
| Q |
11 |
caaaggcaataacctacaaagatgaggtaggcaataaaaagatcatctctcccctaacaagaaagggagttaggaaaagtgttcgttttgcggattcaga |
110 |
Q |
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| T |
2177076 |
caaaggcaataacctacaaagatgaggtaggcaataaaaagatcatatctcccctaacaagaaaggcagttaggaaaagtgttcggtttgcggattcaga |
2176977 |
T |
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| Q |
111 |
acaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatgaattattaggagaaagagaaaggatgaatgttactaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176976 |
acaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatgaattattaggagaaagagaaaggatgaatgttactaga |
2176877 |
T |
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| Q |
211 |
gtgaaggtgaagatgacaaaggaagaagc |
239 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
2176876 |
gtgaaggtaaagatgacaaaggaagaagc |
2176848 |
T |
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