View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11535_high_9 (Length: 252)
Name: NF11535_high_9
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11535_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14331287 - 14331072
Alignment:
| Q |
18 |
cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
117 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14331287 |
cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
14331188 |
T |
|
| Q |
118 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacagcaactcaagaacagcaaaaatgcaaaccacaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
14331187 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccacaaaa |
14331088 |
T |
|
| Q |
218 |
acgcaaaccacataat |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
14331087 |
acgcaaaccacataat |
14331072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 21724759 - 21724544
Alignment:
| Q |
18 |
cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
117 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21724759 |
cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
21724660 |
T |
|
| Q |
118 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacagcaactcaagaacagcaaaaatgcaaaccacaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
21724659 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccacaaaa |
21724560 |
T |
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| Q |
218 |
acgcaaaccacataat |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
21724559 |
acgcaaaccacataat |
21724544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 21804480 - 21804284
Alignment:
| Q |
18 |
cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21804480 |
cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg |
21804381 |
T |
|
| Q |
118 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacagcaactcaagaacagcaaaaatgcaaaccaca |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
21804380 |
ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccaca |
21804284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 9987889 - 9987691
Alignment:
| Q |
16 |
agcacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactca |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9987889 |
agcacaaaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactca |
9987790 |
T |
|
| Q |
116 |
ggttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacagcaactcaagaacagcaaaaatgcaaaccaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9987789 |
ggttttgaatacataagggtgtaaatctagccaaagatcccaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccaca |
9987691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 6061728 - 6061798
Alignment:
| Q |
68 |
tgttaaaatatctcaacaccattcaagaaattagcattctagtactcaggttttgaatacataagggtgta |
138 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
6061728 |
tgttaaaagatctcaacaccattcaagaaattagcattgtagtactcaggttttgaataaataagggtgta |
6061798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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