View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11535_low_15 (Length: 240)
Name: NF11535_low_15
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11535_low_15 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 14484399 - 14484202
Alignment:
| Q |
26 |
aatgatattatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctacaccaacagagaaatacattatctacctccaaatatctgagtg |
125 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14484399 |
aatgatattatttttaaagaacctaaaatcagtacaaaaactcatacaacaaagctacaccaacagagaaatacattatctacctccaaatatctgagtg |
14484300 |
T |
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| Q |
126 |
aaagaaaagaaaacattgagacttagctataatttattccttagataaatcatcccttgctataacatgtacatgattaacccctggaagatgacttt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14484299 |
aaagaaaagaaaacattgagacttagctataatttattccttagataaatcatccctttctataacatgtacatgattaacccctggaagatgacttt |
14484202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 14505659 - 14505468
Alignment:
| Q |
26 |
aatgatattatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctacaccaacagagaaatacattatctacctccaaatatctgagtg |
125 |
Q |
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|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14505659 |
aatggtattatttttaaagaacctaaaattagtacacaaactcatacaacaaagctacaccaacagagaaatacattatctacctccaaatatctgagtg |
14505560 |
T |
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| Q |
126 |
aaagaaaagaaaacattgagacttagctataatttattccttagataaatcatcccttgctataacatgtacatgattaacccctggaagat |
217 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |
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| T |
14505559 |
aaagcaaagaaaacaatgaaacttagctataatttattccttagataaatcacccctttccatatcatgtacatgattaacccctggaagat |
14505468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 14469385 - 14469221
Alignment:
| Q |
26 |
aatgatattatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctacaccaacagagaaatacattatctacctccaaatatctgagtg |
125 |
Q |
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|||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
14469385 |
aatggtattatttttaaagaacctaaaattagtacacaaactcatacaacaa-----------cagagaaatacattctctacctccaaatatctgagtg |
14469297 |
T |
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| Q |
126 |
aaagaaaagaaaacattgagacttagctataatttattccttagataaatcatcccttgctataacatgtacatga |
201 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||| |||||||| ||||| || || ||||||||||| |
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| T |
14469296 |
aaagcaaagaaaacattcaaacttagctataatttattccttatataaatcacccctttctctatcatgtacatga |
14469221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 8070 - 8000
Alignment:
| Q |
33 |
ttatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctaca-ccaacagagaaatacatt |
102 |
Q |
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||||||||| |||| ||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||| |
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| T |
8070 |
ttatttttatagaagctaaaatgagtacaccaactcatacaacaaagctacacccaacagagcaatacatt |
8000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 8714 - 8644
Alignment:
| Q |
33 |
ttatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctaca-ccaacagagaaatacatt |
102 |
Q |
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||||||||| |||| ||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||| |
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| T |
8714 |
ttatttttatagaagctaaaatgagtacaccaactcatacaacaaagctacacccaacagagcaatacatt |
8644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 17029521 - 17029444
Alignment:
| Q |
31 |
tattatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctacaccaacagagaaatacattatctac |
108 |
Q |
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||||||||||||||| |||| || || |||| |||||||||| |||||||||||||| ||||||| ||||| ||||| |
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| T |
17029521 |
tattatttttaaagatgctaatatgagtacactaactcatacaccaaagctacaccaagagagaaacacattctctac |
17029444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 17559957 - 17559880
Alignment:
| Q |
31 |
tattatttttaaagaacctaaaatcaggacacaaactcatacaacaaagctacaccaacagagaaatacattatctac |
108 |
Q |
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||||||||||||||| |||| || || |||| |||||||||| |||||||||||||| ||||||| ||||| ||||| |
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| T |
17559957 |
tattatttttaaagatgctaatatgagtacactaactcatacaccaaagctacaccaagagagaaacacattctctac |
17559880 |
T |
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