View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11535_low_4 (Length: 359)

Name: NF11535_low_4
Description: NF11535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11535_low_4
NF11535_low_4
[»] chr3 (4 HSPs)
chr3 (49-343)||(28880418-28880713)
chr3 (49-132)||(41752501-41752584)
chr3 (158-205)||(31410634-31410682)
chr3 (59-115)||(31853837-31853893)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-132)||(144929-145012)
[»] chr8 (3 HSPs)
chr8 (49-140)||(17075328-17075419)
chr8 (49-140)||(17572851-17572942)
chr8 (60-132)||(11140843-11140915)
[»] chr5 (2 HSPs)
chr5 (49-131)||(30379016-30379099)
chr5 (60-132)||(18279511-18279583)
[»] chr6 (1 HSPs)
chr6 (53-104)||(13685698-13685749)
[»] chr1 (3 HSPs)
chr1 (49-132)||(21091572-21091655)
chr1 (158-219)||(28750171-28750236)
chr1 (188-227)||(8877040-8877080)
[»] chr4 (1 HSPs)
chr4 (49-115)||(35804171-35804237)
[»] scaffold0223 (1 HSPs)
scaffold0223 (81-137)||(28150-28206)
[»] chr7 (1 HSPs)
chr7 (92-132)||(26626441-26626481)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 343
Target Start/End: Original strand, 28880418 - 28880713
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttctgtcaacannnnnnng 148  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||            
T  28880418 gtaaatgatccctatagatattcaggattccgtttttaatccgtacaaaataaaattgcactttttaatttttgtaaaattttctgtcaacattttttat 28880517  T
Q  149 tcgttgtataatttttcatcaacatttttagtcttatacaatttccatcaacattttatccctaaaatgctaaagaaaatgtattaaaaattgtgatttt 248  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28880518 t-gttgtataatttttcatcaatatttttagtcttatacaatttccatcaacattttatccctaaaatgctaaagaaaatgtattaaaaattgtgatttt 28880616  T
Q  249 attttgtaaggattgaat---atttatagagatcttctatttaataacannnnnnnnaaaagagaaaattagacaaatttacaattcaaggtctgtgc 343  Q
    ||||||||||||||||||   ||||||||| ||||| ||||||||||||        ||||||||||||||||||||||||||||||| |||||||||    
T  28880617 attttgtaaggattgaataacatttatagaaatcttttatttaataaca-tttttttaaaagagaaaattagacaaatttacaattcagggtctgtgc 28880713  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 41752501 - 41752584
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    ||||||| || ||||| |||||||| |||  ||||||| ||| |||||||||||||  |||| |||||||| | ||||||||||    
T  41752501 gtaaatggtccctataaatattcagaattttgtttttagtccctacaaaataaaatcacactttttaatctctataaaattttc 41752584  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 31410634 - 31410682
Alignment:
Q  158 aatttttcatcaacatttttagt-cttatacaatttccatcaacatttt 205  Q
    ||||||||||||||||||||||| |||||| | ||||||||| ||||||    
T  31410634 aatttttcatcaacatttttagtccttataaattttccatcagcatttt 31410682  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 31853837 - 31853893
Alignment:
Q  59 tctatagatattcaggattccgtttttaatccatacaaaataaaattgcactcttta 115  Q
    |||||| |||||||| ||| | |||||||||| ||||||||||||||| ||| ||||    
T  31853837 tctataaatattcagaatttcatttttaatccctacaaaataaaattgtacttttta 31853893  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 144929 - 145012
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    |||||||||||||||| |||||||| |||  ||||||||| | || ||||||||||| |||| |||| || || ||||||||||    
T  144929 gtaaatgatctctataaatattcagaattttgtttttaattcctaaaaaataaaattacactttttagtccttataaaattttc 145012  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 17075328 - 17075419
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttctgtcaaca 140  Q
    |||||||||||||||| |||||||  |||   |||||| ||| |||||||||||||  |||  |||| ||||||||||||||||| ||||||    
T  17075328 gtaaatgatctctataaatattcaaaattttatttttagtccctacaaaataaaatcacaccttttattctttgtaaaattttctatcaaca 17075419  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 17572942 - 17572851
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttctgtcaaca 140  Q
    |||||||||||||||| |||||||  |||   |||||| ||| |||||||||||||  |||  |||| ||||||||||||||||| ||||||    
T  17572942 gtaaatgatctctataaatattcaaaattttatttttagtccctacaaaataaaatcacaccttttattctttgtaaaattttctatcaaca 17572851  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 11140915 - 11140843
Alignment:
Q  60 ctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    ||||| |||||||| |||  ||||||| ||| |||||||||||||  |||| ||||||| || ||||||||||    
T  11140915 ctataaatattcagaattttgtttttagtccctacaaaataaaatcacactttttaatccttataaaattttc 11140843  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 30379016 - 30379099
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatc-tttgtaaaatttt 131  Q
    |||||||||||||||| |||| ||  |||  ||||||||||| ||||||||||||||||| | |||| || |||||||||||||    
T  30379016 gtaaatgatctctataaatatacacaattttgtttttaatccctacaaaataaaattgcattttttagtcttttgtaaaatttt 30379099  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 18279583 - 18279511
Alignment:
Q  60 ctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    ||||| |||||||| |||  ||||||| ||| |||||||||||||  |||| ||||||| || ||||||||||    
T  18279583 ctataaatattcagaattttgtttttagtccgtacaaaataaaatcacactttttaatccttataaaattttc 18279511  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 13685749 - 13685698
Alignment:
Q  53 atgatctctatagatattcaggattccgtttttaatccatacaaaataaaat 104  Q
    |||||||||||| |||||||| |||  ||||||||||| |||||||||||||    
T  13685749 atgatctctataaatattcagaattttgtttttaatccctacaaaataaaat 13685698  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 21091655 - 21091572
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    ||||||| || ||||| |||||||| |||  ||||||| |||||||||||||||||  |||| |||||||  | ||||||||||    
T  21091655 gtaaatggtcgctataaatattcagaattttgtttttagtccatacaaaataaaatcacactttttaatccatttaaaattttc 21091572  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 28750171 - 28750236
Alignment:
Q  158 aatttttcatcaacatttttagtcttatacaa--tttccatcaacatttt--atccctaaaatgct 219  Q
    |||||||||||||||||||||||| |||| ||  ||||||||||||||||   |||||||||||||    
T  28750171 aatttttcatcaacatttttagtcctataaaatttttccatcaacatttttagtccctaaaatgct 28750236  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8877040 - 8877080
Alignment:
Q  188 aatttccatcaacatttt-atccctaaaatgctaaagaaaa 227  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  8877040 aatttccatcaacatttttatccctaaaatgcttaagaaaa 8877080  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 35804171 - 35804237
Alignment:
Q  49 gtaaatgatctctatagatattcaggattccgtttttaatccatacaaaataaaattgcactcttta 115  Q
    ||||||| || ||||| |||||||| |||  ||||||| ||| ||||||||||||||||||| ||||    
T  35804171 gtaaatggtccctataaatattcagaattttgtttttagtccctacaaaataaaattgcacttttta 35804237  T

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Target: scaffold0223 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 28150 - 28206
Alignment:
Q  81 tttttaatccatacaaaataaaattgcactctttaatctttgtaaaattttctgtca 137  Q
    |||||| ||| ||||||||||||||||||| |||| ||  |||||||||||| ||||    
T  28150 tttttagtccctacaaaataaaattgcactttttagtccctgtaaaattttccgtca 28206  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 26626481 - 26626441
Alignment:
Q  92 tacaaaataaaattgcactctttaatctttgtaaaattttc 132  Q
    |||||||||||||| |||| |||||||||| ||||||||||    
T  26626481 tacaaaataaaattacactttttaatctttataaaattttc 26626441  T

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