View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_high_11 (Length: 300)
Name: NF11536_high_11
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 9857761 - 9857472
Alignment:
| Q |
1 |
acttcttcccattgatatcctccgtaatcatcttcacaataaacttcatactcatcatcttcttcaacctccatttcctcttcatcttcaaattcatcca |
100 |
Q |
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| T |
9857761 |
acttcttcccattgatatcctccgtaatcatcttcacaataaacttcatactcatcatcttcttcaacctccatttcctcttcatcttcaaattcatcca |
9857662 |
T |
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| Q |
101 |
aaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcataagtttcactttcaatagcacttgtaataggaag |
200 |
Q |
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| T |
9857661 |
aaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcataagtttcactttcaatagcacttgtaataggaag |
9857562 |
T |
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| Q |
201 |
agccaacccattatcttcctccccaacctcaatttcctcttcatcctcttccaaacaaaggttctcttcatctccgtaatcaccttcatc |
290 |
Q |
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| T |
9857561 |
agccaacccattatcttcctccccaacctcaatttcctctttatcctcttccaaacaaaggttctcttcatctccgtaatcaccttcatc |
9857472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 9857892 - 9857797
Alignment:
| Q |
59 |
cttcttcaacctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataat |
154 |
Q |
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| T |
9857892 |
cttcttcaacctccatttcctcttcatcttcatattcttccaaaccaacgttccattgatatcctccgtaatcatcttcataattaacttcataat |
9857797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 9857840 - 9857757
Alignment:
| Q |
9 |
ccattgatatcctccgtaatcatcttcacaataaacttcatactcatcatctt---cttcaacctccatttcctcttcatcttc |
89 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| | |||||||| ||||||||||||||||||||||| |||| |
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| T |
9857840 |
ccattgatatcctccgtaatcatcttcataattaacttcataataatcatcttcttcttcaacctccatttcctcttcaacttc |
9857757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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