View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_high_12 (Length: 297)
Name: NF11536_high_12
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 4915610 - 4915889
Alignment:
| Q |
16 |
gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915610 |
gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat |
4915709 |
T |
|
| Q |
116 |
gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4915710 |
gcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgtt |
4915809 |
T |
|
| Q |
216 |
aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgatca |
295 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||| |
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| T |
4915810 |
aggtctccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatatacctttcattgatca |
4915889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 2931220 - 2930942
Alignment:
| Q |
16 |
gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat |
115 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| || ||||| ||||| ||||||| |||||| |||||| |||| ||||| | |||||||||||||||||| |
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| T |
2931220 |
gagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaatgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgat |
2931121 |
T |
|
| Q |
116 |
gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct |
215 |
Q |
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||||||||| |||||||| || ||| || ||||||||||| ||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||| | |
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| T |
2931120 |
tcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattttgttgacagcatcaaagaggcaagttggctaaagacatcttgtggtctt |
2931021 |
T |
|
| Q |
216 |
aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgatc |
294 |
Q |
| |
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||| ||| || ||||| |||||||||| |||| |||||||||||||||||| ||||||||| ||| | ||||||||| |
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| T |
2931020 |
aggcctcctgtgggatcggtattgaatgactcaggatggcaagttgcatcacaaattagtgatatccctttcattgatc |
2930942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 3011547 - 3011829
Alignment:
| Q |
16 |
gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat |
115 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||| | |||||| |||| |||||| ||||| |||| |||| | |||| ||||||||||||| |
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| T |
3011547 |
gagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctcatgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgat |
3011646 |
T |
|
| Q |
116 |
gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||| | | |||||| ||||||||||||||||| |||| | |
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| T |
3011647 |
gcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattttgtcgacagcataagaaagggaaattggctaaagacatcttttggtctt |
3011746 |
T |
|
| Q |
216 |
aggtatccagttggatctgtattgaatggttcagaatggcaagttg---catcacagattagtgatgtccatctcattgatca |
295 |
Q |
| |
|
|||| ||| || ||||| |||||||||| ||| | ||||||||||| ||||||| ||||||||| | | | |||||||||| |
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| T |
3011747 |
aggtctcctgtgggatcggtattgaatgattccggatggcaagttgtatcatcacaaattagtgatattcctttcattgatca |
3011829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 278
Target Start/End: Complemental strand, 2947854 - 2947605
Alignment:
| Q |
35 |
ggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaacttcatccaatat |
134 |
Q |
| |
|
||||| |||| | |||||||| | ||||||||||| ||||||||||||| ||||||||| | || |||||||||| |||||||||||||||||||||| |
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| T |
2947854 |
ggaagtatgttatttcattggaagagagctaatgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatat |
2947755 |
T |
|
| Q |
135 |
ctcaggaaaagtc------ttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgctaggtatccagttg |
228 |
Q |
| |
|
||| |||||||| ||||| ||| ||| |||||| ||| | ||||| |||||||||||||||||||||| |||| ||||| ||| || | |
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| T |
2947754 |
ctccagaaaagtcgtctttttctttgtttagacttatttgtcgacttcctcaaacagggaagttggctaaagacatcacatggttttaggtctcctgtgg |
2947655 |
T |
|
| Q |
229 |
gatctgtattgaatggttcagaatggcaagttgcatcacagattagtgat |
278 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||||||| ||||||||| |
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| T |
2947654 |
gatctgtattgaatgattccggatggcaagttgcatcacaaattagtgat |
2947605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 37796705 - 37796462
Alignment:
| Q |
32 |
tgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaacttcatccaa |
131 |
Q |
| |
|
||||||||||||| | |||||||| | ||| || |||| ||| || |||| || ||||||| |||| |||||| |||||||||||||| ||||||||| |
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| T |
37796705 |
tgaggaagcatgtaaattcattggaagagaactgatgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaa |
37796606 |
T |
|
| Q |
132 |
tatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgctaggtatccagttggat |
231 |
Q |
| |
|
|||||||||| ||||||||| || || |||||||||||| ||| ||||| ||| | | |||||||||||||||| ||| ||||| ||| ||||||| |
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|
| T |
37796605 |
tatctcaggagaagtcttctcccattggacaaatttgtgaacagcatcagagatgaaccttggctaaagacatctgaaggtcttaggtctcctgttggat |
37796506 |
T |
|
| Q |
232 |
ctgtattgaatggttcagaatggcaagttgcatcacagattagt |
275 |
Q |
| |
|
|||| ||||||| ||| | |||| |||| |||||||| |||||| |
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|
| T |
37796505 |
ctgttttgaatgattccggatggaaagtagcatcacaaattagt |
37796462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 2921800 - 2921708
Alignment:
| Q |
88 |
ctttaagaaagagtcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatca |
180 |
Q |
| |
|
||||||| |||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||| ||||| |
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| T |
2921800 |
ctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatttgtgaacagcatca |
2921708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 1505862 - 1506139
Alignment:
| Q |
16 |
gagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaatgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgat |
115 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||| | ||| ||||||| |||||| |||||| ||||||||||| ||||||||||||||||| |
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|
| T |
1505862 |
gagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaatgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgat |
1505961 |
T |
|
| Q |
116 |
gcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaagacatcttgtggtgct |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||| | | ||| ||||||||||||||||||||||||| | |
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|
| T |
1505962 |
gcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactttgtcaactgcataagaaaggaaagttggctaaagacatcttgtggtctt |
1506061 |
T |
|
| Q |
216 |
aggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattagtgatgtccatctcattgat |
293 |
Q |
| |
|
|||| ||| || ||||||||| |||||| ||| |||||||||||||||||||||||| || ||| | |||||||| |
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|
| T |
1506062 |
aggtctcctgtgggatctgtactgaatgattctagctggcaagttgcatcacagattagtaatatccctatcattgat |
1506139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 28025634 - 28025461
Alignment:
| Q |
101 |
tcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttcttcctttcgacaaatttgtggacaacatcaaagagggaagttggctaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||| ||||| ||| ||| |||||||||| |
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| T |
28025634 |
tcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatttgtgaacagcatcagagatggaccttggctaaag |
28025535 |
T |
|
| Q |
201 |
acatcttgtggtgctaggtatccagttggatctgtattgaatggttcagaatggcaagttgcatcacagattag |
274 |
Q |
| |
|
||||||| ||| |||| ||| || ||||| |||||| ||| ||| | ||||||||| ||||| |||||||| |
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| T |
28025534 |
acatctttgggtctaaggtctcctgtgggatcagtattgcatgattccggatggcaagtcgcatctcagattag |
28025461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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