View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11536_high_16 (Length: 244)

Name: NF11536_high_16
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11536_high_16
NF11536_high_16
[»] chr4 (37 HSPs)
chr4 (89-244)||(52879948-52880106)
chr4 (6-91)||(52880139-52880224)
chr4 (6-66)||(37109345-37109405)
chr4 (7-66)||(7292793-7292852)
chr4 (7-52)||(23377992-23378037)
chr4 (6-66)||(7949448-7949508)
chr4 (6-52)||(37274453-37274499)
chr4 (11-64)||(5450117-5450170)
chr4 (11-52)||(46329200-46329241)
chr4 (8-49)||(49576890-49576931)
chr4 (6-66)||(16581715-16581775)
chr4 (6-50)||(38869806-38869850)
chr4 (6-66)||(53496899-53496959)
chr4 (8-55)||(2185028-2185075)
chr4 (7-50)||(12798722-12798765)
chr4 (6-49)||(51969056-51969099)
chr4 (6-52)||(2622389-2622435)
chr4 (6-52)||(51622521-51622567)
chr4 (6-47)||(4249218-4249259)
chr4 (10-47)||(46295138-46295175)
chr4 (10-66)||(30938217-30938273)
chr4 (6-66)||(31759652-31759712)
chr4 (10-50)||(39509108-39509148)
chr4 (7-50)||(7539628-7539671)
chr4 (10-49)||(9936959-9936998)
chr4 (7-66)||(13265103-13265162)
chr4 (6-49)||(19680782-19680825)
chr4 (7-49)||(8030199-8030241)
chr4 (10-52)||(32992648-32992690)
chr4 (10-52)||(37720212-37720254)
chr4 (6-47)||(19531996-19532037)
chr4 (26-55)||(47202437-47202466)
chr4 (10-66)||(19238575-19238631)
chr4 (6-50)||(28635734-28635778)
chr4 (6-66)||(33632130-33632190)
chr4 (9-45)||(34661708-34661744)
chr4 (10-66)||(55427198-55427254)
[»] chr5 (28 HSPs)
chr5 (6-55)||(14285194-14285243)
chr5 (6-66)||(25627079-25627139)
chr5 (6-66)||(34984828-34984888)
chr5 (6-47)||(37258360-37258401)
chr5 (6-50)||(43442234-43442278)
chr5 (6-52)||(16773843-16773889)
chr5 (6-66)||(7918463-7918523)
chr5 (7-49)||(25979209-25979251)
chr5 (6-47)||(29173531-29173572)
chr5 (10-50)||(84862-84902)
chr5 (10-66)||(30883196-30883252)
chr5 (12-55)||(87423-87466)
chr5 (18-65)||(4793094-4793141)
chr5 (8-47)||(8779306-8779345)
chr5 (7-46)||(18437127-18437166)
chr5 (7-66)||(26078046-26078105)
chr5 (10-52)||(3315251-3315293)
chr5 (7-49)||(17028259-17028301)
chr5 (6-52)||(18595995-18596041)
chr5 (10-43)||(18974005-18974038)
chr5 (6-47)||(29210399-29210440)
chr5 (6-47)||(31074273-31074314)
chr5 (8-49)||(39327086-39327127)
chr5 (10-66)||(16457832-16457888)
chr5 (6-50)||(29075819-29075863)
chr5 (12-52)||(30109308-30109348)
chr5 (7-47)||(35796614-35796654)
chr5 (7-47)||(41730583-41730623)
[»] scaffold0180 (1 HSPs)
scaffold0180 (6-66)||(19956-20016)
[»] chr8 (31 HSPs)
chr8 (6-66)||(12988450-12988510)
chr8 (6-64)||(33017238-33017296)
chr8 (6-63)||(13129693-13129750)
chr8 (6-66)||(8794339-8794399)
chr8 (7-46)||(31408117-31408156)
chr8 (8-66)||(968384-968442)
chr8 (8-66)||(3624602-3624660)
chr8 (6-66)||(6536542-6536602)
chr8 (10-66)||(16852362-16852418)
chr8 (6-66)||(18540320-18540380)
chr8 (10-66)||(19703485-19703541)
chr8 (8-51)||(22193360-22193403)
chr8 (6-49)||(23361643-23361686)
chr8 (7-49)||(11819815-11819857)
chr8 (7-49)||(27750769-27750811)
chr8 (10-52)||(28783096-28783138)
chr8 (10-66)||(2203514-2203570)
chr8 (6-50)||(35690058-35690102)
chr8 (10-50)||(36205233-36205273)
chr8 (8-47)||(35287757-35287796)
chr8 (11-53)||(11928730-11928772)
chr8 (12-66)||(29858049-29858103)
chr8 (7-45)||(33727868-33727906)
chr8 (7-49)||(44780109-44780151)
chr8 (9-66)||(3058046-3058103)
chr8 (8-49)||(3721153-3721194)
chr8 (9-50)||(6569768-6569809)
chr8 (8-49)||(16843790-16843831)
chr8 (8-49)||(35641897-35641938)
chr8 (11-47)||(21566781-21566817)
chr8 (7-43)||(43594313-43594349)
[»] chr7 (52 HSPs)
chr7 (6-66)||(2962481-2962541)
chr7 (6-66)||(26459404-26459464)
chr7 (6-66)||(7721391-7721451)
chr7 (7-66)||(43215206-43215265)
chr7 (10-52)||(22760899-22760941)
chr7 (6-60)||(27313728-27313782)
chr7 (7-64)||(5830598-5830655)
chr7 (7-52)||(23552154-23552199)
chr7 (6-54)||(17113829-17113877)
chr7 (6-46)||(25655222-25655262)
chr7 (6-66)||(38851278-38851338)
chr7 (8-55)||(14058286-14058333)
chr7 (8-55)||(14368314-14368361)
chr7 (7-66)||(39631866-39631925)
chr7 (6-52)||(2882986-2883032)
chr7 (8-50)||(17041008-17041050)
chr7 (7-49)||(18363735-18363777)
chr7 (6-47)||(13106776-13106817)
chr7 (6-47)||(15137594-15137635)
chr7 (6-43)||(21558173-21558210)
chr7 (6-51)||(27376751-27376796)
chr7 (9-66)||(30442510-30442567)
chr7 (6-47)||(41519258-41519299)
chr7 (6-50)||(9183185-9183229)
chr7 (6-46)||(11700207-11700247)
chr7 (10-66)||(20335829-20335885)
chr7 (6-66)||(24438241-24438301)
chr7 (10-46)||(29916806-29916842)
chr7 (6-66)||(33222392-33222452)
chr7 (10-66)||(43590929-43590985)
chr7 (7-50)||(9608624-9608667)
chr7 (7-50)||(9836196-9836239)
chr7 (10-49)||(37085547-37085586)
chr7 (10-49)||(42711997-42712036)
chr7 (10-52)||(19553489-19553531)
chr7 (8-66)||(20952145-20952203)
chr7 (9-47)||(29385740-29385778)
chr7 (6-52)||(30579371-30579417)
chr7 (13-47)||(31835233-31835267)
chr7 (6-52)||(33869439-33869485)
chr7 (15-52)||(7801216-7801253)
chr7 (10-47)||(18056773-18056810)
chr7 (9-50)||(30217917-30217958)
chr7 (6-50)||(5934159-5934203)
chr7 (8-48)||(7309396-7309436)
chr7 (6-50)||(7744106-7744150)
chr7 (10-66)||(11720958-11721014)
chr7 (10-66)||(15905672-15905727)
chr7 (6-50)||(29785295-29785339)
chr7 (11-43)||(30301925-30301957)
chr7 (10-46)||(38374597-38374633)
chr7 (16-52)||(41703333-41703369)
[»] chr2 (38 HSPs)
chr2 (10-66)||(29503293-29503349)
chr2 (9-66)||(42327392-42327449)
chr2 (6-66)||(42922436-42922497)
chr2 (6-55)||(40416384-40416433)
chr2 (6-66)||(4060208-4060268)
chr2 (8-52)||(4262298-4262342)
chr2 (6-66)||(16918572-16918632)
chr2 (7-55)||(21195671-21195719)
chr2 (10-66)||(37480097-37480153)
chr2 (7-66)||(19322790-19322849)
chr2 (6-49)||(21303988-21304031)
chr2 (6-52)||(19244145-19244191)
chr2 (10-52)||(39715028-39715070)
chr2 (7-64)||(11062384-11062441)
chr2 (6-47)||(13803536-13803577)
chr2 (6-66)||(11251109-11251169)
chr2 (6-50)||(14500315-14500359)
chr2 (10-66)||(23052521-23052577)
chr2 (12-47)||(10449063-10449098)
chr2 (9-52)||(27244344-27244387)
chr2 (6-49)||(33839254-33839297)
chr2 (7-49)||(6859307-6859349)
chr2 (12-66)||(12086129-12086183)
chr2 (8-50)||(23230601-23230643)
chr2 (8-66)||(42602576-42602634)
chr2 (6-39)||(4226111-4226144)
chr2 (7-64)||(6658406-6658463)
chr2 (9-46)||(7599978-7600015)
chr2 (13-66)||(17737625-17737678)
chr2 (7-52)||(33582009-33582054)
chr2 (6-47)||(45026784-45026825)
chr2 (6-46)||(11738038-11738078)
chr2 (7-43)||(12497777-12497813)
chr2 (12-52)||(12994376-12994416)
chr2 (10-66)||(21213791-21213847)
chr2 (6-66)||(30410543-30410603)
chr2 (6-46)||(34041582-34041622)
chr2 (12-52)||(42860384-42860424)
[»] chr1 (44 HSPs)
chr1 (6-50)||(8177176-8177220)
chr1 (6-66)||(33700767-33700827)
chr1 (6-66)||(36371492-36371552)
chr1 (6-66)||(51703801-51703861)
chr1 (6-64)||(4566572-4566630)
chr1 (6-55)||(3265957-3266006)
chr1 (6-50)||(2799900-2799944)
chr1 (6-53)||(1247148-1247195)
chr1 (10-52)||(16169976-16170018)
chr1 (9-50)||(15786317-15786358)
chr1 (6-66)||(9165189-9165249)
chr1 (6-66)||(10526845-10526905)
chr1 (6-66)||(21547474-21547534)
chr1 (6-49)||(1600286-1600329)
chr1 (6-49)||(23566333-23566376)
chr1 (6-53)||(50919989-50920036)
chr1 (7-49)||(6122833-6122875)
chr1 (11-49)||(38947471-38947509)
chr1 (8-46)||(51814536-51814574)
chr1 (6-46)||(8904456-8904496)
chr1 (10-46)||(19528325-19528361)
chr1 (6-62)||(29056404-29056460)
chr1 (6-50)||(40810505-40810549)
chr1 (10-49)||(24047100-24047139)
chr1 (7-46)||(44961807-44961846)
chr1 (8-66)||(2219994-2220052)
chr1 (6-48)||(6650635-6650677)
chr1 (8-46)||(12587312-12587350)
chr1 (10-52)||(52029935-52029977)
chr1 (7-52)||(14787331-14787376)
chr1 (9-66)||(31383795-31383852)
chr1 (10-47)||(43446004-43446041)
chr1 (10-47)||(45266875-45266912)
chr1 (8-45)||(51281394-51281431)
chr1 (7-43)||(3799951-3799987)
chr1 (8-52)||(12370199-12370243)
chr1 (6-66)||(17745250-17745310)
chr1 (14-46)||(21392879-21392911)
chr1 (6-46)||(22049822-22049862)
chr1 (10-50)||(27223128-27223168)
chr1 (7-55)||(27567117-27567165)
chr1 (7-47)||(40814403-40814443)
chr1 (10-66)||(52116779-52116835)
chr1 (6-50)||(52336768-52336812)
[»] chr6 (26 HSPs)
chr6 (7-66)||(12188298-12188357)
chr6 (8-66)||(33549126-33549184)
chr6 (9-52)||(23910108-23910151)
chr6 (12-66)||(10338174-10338228)
chr6 (6-52)||(17328258-17328304)
chr6 (7-52)||(20213077-20213122)
chr6 (7-52)||(22107100-22107145)
chr6 (8-52)||(6385898-6385942)
chr6 (10-50)||(24641188-24641228)
chr6 (6-66)||(28363959-28364019)
chr6 (6-49)||(15951296-15951339)
chr6 (8-47)||(28841455-28841494)
chr6 (6-52)||(14278105-14278151)
chr6 (10-64)||(16405109-16405163)
chr6 (9-55)||(19638001-19638047)
chr6 (6-51)||(11306168-11306213)
chr6 (9-66)||(12216766-12216823)
chr6 (12-49)||(14199947-14199984)
chr6 (9-46)||(16535226-16535263)
chr6 (6-55)||(27989651-27989700)
chr6 (8-52)||(6691547-6691590)
chr6 (8-52)||(12234503-12234547)
chr6 (8-48)||(19162823-19162863)
chr6 (7-47)||(20863416-20863456)
chr6 (18-66)||(31622997-31623045)
chr6 (10-46)||(34444845-34444881)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-66)||(94965-95025)
[»] chr3 (47 HSPs)
chr3 (6-66)||(16354886-16354946)
chr3 (6-66)||(27093355-27093415)
chr3 (7-55)||(37788460-37788508)
chr3 (6-50)||(46518666-46518710)
chr3 (6-66)||(53412967-53413027)
chr3 (7-49)||(8075122-8075164)
chr3 (6-52)||(10445133-10445179)
chr3 (6-52)||(27259197-27259243)
chr3 (7-49)||(36720420-36720462)
chr3 (9-50)||(30311344-30311385)
chr3 (8-49)||(30715781-30715822)
chr3 (6-50)||(28703398-28703442)
chr3 (6-50)||(39253735-39253779)
chr3 (7-50)||(3427548-3427591)
chr3 (8-47)||(14186688-14186727)
chr3 (7-66)||(32651433-32651492)
chr3 (8-50)||(51766933-51766975)
chr3 (6-50)||(4222179-4222223)
chr3 (10-50)||(8501571-8501611)
chr3 (6-50)||(15048055-15048099)
chr3 (8-52)||(20501732-20501776)
chr3 (8-52)||(26481963-26482007)
chr3 (9-49)||(33899653-33899693)
chr3 (6-54)||(36010776-36010824)
chr3 (10-66)||(47236969-47237025)
chr3 (6-49)||(8796087-8796130)
chr3 (10-49)||(14339649-14339688)
chr3 (10-49)||(17108896-17108935)
chr3 (12-51)||(17765164-17765203)
chr3 (12-51)||(19066484-19066523)
chr3 (8-50)||(4844507-4844549)
chr3 (8-50)||(4870203-4870245)
chr3 (9-51)||(19154668-19154710)
chr3 (8-66)||(21960573-21960631)
chr3 (8-50)||(44743851-44743893)
chr3 (8-50)||(51903874-51903916)
chr3 (10-52)||(54990738-54990780)
chr3 (13-66)||(8170694-8170747)
chr3 (10-47)||(19716238-19716275)
chr3 (10-47)||(47454615-47454652)
chr3 (9-50)||(52769980-52770021)
chr3 (14-50)||(11612337-11612373)
chr3 (26-66)||(18319182-18319222)
chr3 (6-50)||(31608518-31608562)
chr3 (6-50)||(31788964-31789008)
chr3 (11-47)||(44069799-44069835)
chr3 (17-49)||(49452912-49452944)
[»] scaffold0258 (1 HSPs)
scaffold0258 (8-66)||(15319-15377)
[»] scaffold0194 (1 HSPs)
scaffold0194 (8-50)||(13042-13084)
[»] scaffold0006 (1 HSPs)
scaffold0006 (6-55)||(18332-18381)
[»] scaffold0299 (1 HSPs)
scaffold0299 (6-50)||(11566-11610)
[»] scaffold0291 (1 HSPs)
scaffold0291 (10-50)||(2468-2508)
[»] scaffold0004 (1 HSPs)
scaffold0004 (10-64)||(81562-81616)
[»] scaffold0238 (2 HSPs)
scaffold0238 (6-47)||(2705-2746)
scaffold0238 (6-49)||(5232-5275)
[»] scaffold0126 (1 HSPs)
scaffold0126 (6-49)||(25341-25384)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 52880106 - 52879948
Alignment:
Q  89 ttataatatcaaaattttgtgttcagatatcaactttgtttaaatttctccnnnnnnnnn---ggtatgcatatatttcattatatttttcgctgttatt 185  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||            ||||| |||||||||||||||||||||||||||||||    
T  52880106 ttataatatcaaaattttgtgttcagatatcaactttgtttgaatttctccaaaaaaaaaaaaggtatacatatatttcattatatttttcgctgttatt 52880007  T
Q  186 ttctccaacctttagatatatacggttgtgtttatccttatctaatctaaattttgtac 244  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52880006 ttctccaacctttagatatatacggttgtgtttctccttatctaatctaaattttgtac 52879948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 52880224 - 52880139
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaataccccctttaattattactatttactta 91  Q
    ||||||||||| || || ||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||    
T  52880224 cagagagaatcaaatctaaaaccttgaggagaagcacacccccgggttcctagccaataccccctttaattattactatctactta 52880139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 37109345 - 37109405
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 37109405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 7292793 - 7292852
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||    
T  7292793 agagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaatacc 7292852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23378037 - 23377992
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  23378037 agagagaatcgaacctgagaccttgaggaggagcacactcccaggt 23377992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7949448 - 7949508
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| || | ||||||||    
T  7949448 cagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 37274453 - 37274499
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  37274453 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggt 37274499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 5450170 - 5450117
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    ||||||||| |||||||||||||||||||||||||||||| |||| | ||||||    
T  5450170 agaatcgaatctgaaaccttgaggaggagcacactcccagattccaagccaata 5450117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 46329241 - 46329200
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  46329241 agaatcgaacctgataccttgaggaggagcacactcccaggt 46329200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 49576890 - 49576931
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  49576890 gagagaatcgaacctgagaccttgaggaggagcacactccca 49576931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 16581775 - 16581715
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| ||| |||||||| |||||||||||||||| ||||||||||||| | ||||||||    
T  16581775 cagagataatagaacctgagaccttgaggaggagcagactcccaggttccaagccaatacc 16581715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 38869850 - 38869806
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  38869850 cagagggaatcgaacctgagaccttgaggaggagcacactcccag 38869806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 53496959 - 53496899
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| || |||| || |||||||||||||||||||||||| || ||||||||||    
T  53496959 cagagagaatcaaatctgagactttgaggaggagcacactcccaggtcccaaaccaatacc 53496899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 2185028 - 2185075
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||    
T  2185028 gagagaatcgaacctgagactttgagaaggagcacactcccaggttcc 2185075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 12798765 - 12798722
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||||||| |||||| |||||||||||||    
T  12798765 agagagaatcgaacctgaaacctcgaggagcagcacactcccag 12798722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 51969099 - 51969056
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  51969099 cagagagaaatgaacctgaaaccttgaggaggagcacactccca 51969056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2622389 - 2622435
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||    
T  2622389 cagagagaatcgaacctgagacatggaggaggagcacactcccaggt 2622435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 51622567 - 51622521
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||||    
T  51622567 cagagagagtcgaacctgagaccttgaggaggagcacactccaaggt 51622521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 4249259 - 4249218
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  4249259 cagagagaatcaaacctgagaccttgaggaggagcacactcc 4249218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 46295175 - 46295138
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  46295175 gagaatcgaacctgagaccttgaggaggagcacactcc 46295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30938217 - 30938273
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| |||| ||||||||||||||||| || | || ||||||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatacc 30938273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 31759652 - 31759712
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||| ||||||||| |||| |||||||||||||||||||||||| || || | ||||||||    
T  31759652 cagaaagaatcgaatctgagaccttgaggaggagcacactcccaagtcccaagccaatacc 31759712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 39509148 - 39509108
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccag 39509108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 7539671 - 7539628
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||    
T  7539671 agagagaatcgaacctgagaccttgagaaggagcatactcccag 7539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 9936959 - 9936998
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  9936959 gagaatcgaacctgaaacttcgaggaggagcacactccca 9936998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 13265103 - 13265162
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||| |||||||| | |||||||||||| |||||||| || | ||||||||    
T  13265103 agagagaatcgaatctgaaaccataaggaggagcacattcccaggtcccaagccaatacc 13265162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 19680782 - 19680825
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||| | |||||||||| |||||||||||||    
T  19680782 cagagagaatcgaacctaagaccttgaggaagagcacactccca 19680825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 8030199 - 8030241
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  8030199 agagggaatcgaacttgagaccttgaggaggagcacactccca 8030241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32992690 - 32992648
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||    
T  32992690 gagaatcgaacttgagaccttgaggaggagcacactccaaggt 32992648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 37720212 - 37720254
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||  |||||||||||| ||||||||||||||    
T  37720212 gagaatcgaacctgggaccttgaggaggggcacactcccaggt 37720254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 19531996 - 19532037
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  19531996 cagagagaatcgaacctgaaaacttaaggaggagcacgctcc 19532037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 47202437 - 47202466
Alignment:
Q  26 accttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||||||||||||||||    
T  47202437 accttgaggaggagcacactcccaggttcc 47202466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 19238575 - 19238631
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||| || |||| ||||||||||||||||||| || || | ||||||||    
T  19238575 gagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaatacc 19238631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 28635778 - 28635734
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||    
T  28635778 cagagagaatcgaacctaagacctccaggaggagcacactcccag 28635734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 33632130 - 33632190
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||| ||||  |||||||||||||||| |||||||  |||| | ||||||||    
T  33632130 cagagagaatcgatcctgggaccttgaggaggagcatactcccatattccaagccaatacc 33632190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 34661744 - 34661708
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacact 45  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  34661744 agagaatcgaacctaaaaccttgaagaggagcacact 34661708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 55427198 - 55427254
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| |||| ||| ||||||| |||||||||| || | ||||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatacc 55427254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 14285243 - 14285194
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14285243 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggttcc 14285194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 25627139 - 25627079
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||    
T  25627139 cagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaatacc 25627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 34984888 - 34984828
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  34984888 cagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaatacc 34984828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 37258360 - 37258401
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37258360 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 37258401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 43442278 - 43442234
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  43442278 cagagagaatcgaacctgagaccttgaggaggagcacactcccag 43442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 16773889 - 16773843
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggt 16773843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7918463 - 7918523
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| | ||||||||||||||  |||||||||||||| | ||||||||    
T  7918463 cagagagaatcgaacctaagaccttgaggaggagtgcactcccaggttccaagccaatacc 7918523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 25979251 - 25979209
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  25979251 agagagaatcgaacctgagaccttgaggaggagaacactccca 25979209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 29173572 - 29173531
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  29173572 cagagataatcgaacctgaaacctcgaggaggagcacactcc 29173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 84902 - 84862
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  84902 gagaatcgaacttgagaccttgaggaggagcacactcccag 84862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30883196 - 30883252
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| |||| ||| ||||||||||||||||||||||||||| || | ||||||||    
T  30883196 gagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaatacc 30883252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 87423 - 87466
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  87423 gaatcaaacctgagaccttgaggaggagcacactcccagattcc 87466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 4793094 - 4793141
Alignment:
Q  18 aacctgaaaccttgaggaggagcacactcccaggttcctaaccaatac 65  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||    
T  4793094 aacctgagacctcgaggaggagcacactcccaggtcccaaaccaatac 4793141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 8779306 - 8779345
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  8779306 gagataatcgaacctgaaacctcgaggaggagcacactcc 8779345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 18437166 - 18437127
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  18437166 agagagaatcgaacccgaaactttgaggaggagcacactc 18437127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 26078046 - 26078105
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||| || || ||||||||||    
T  26078046 agagagaatcgaacctgagaccttgaagagaagcatactcccaagtcccaaaccaatacc 26078105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 3315293 - 3315251
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||    
T  3315293 gagaatcgaacctgagaccttgaggaggagcgcactccaaggt 3315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 17028259 - 17028301
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||    
T  17028259 agagggaatcaaacctgagaccttgaggaggagcacactccca 17028301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 18595995 - 18596041
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||| |||||||||| | |||||||||||||||||| ||||||||    
T  18595995 cagagaaaatcgaacctaagaccttgaggaggagcacattcccaggt 18596041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 18974038 - 18974005
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcaca 43  Q
    ||||||||||||||| ||||||||||||||||||    
T  18974038 gagaatcgaacctgacaccttgaggaggagcaca 18974005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 29210440 - 29210399
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||| |||| |||||||| |||||||||||||||||    
T  29210440 cagagagaattgaacttgaaacctcgaggaggagcacactcc 29210399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 31074314 - 31074273
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  31074314 cagagagaatcgaacctgagatcttgaggaggaacacactcc 31074273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 39327086 - 39327127
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||| || | ||||||||||||||||||||||||    
T  39327086 gagagaatcgaagctaagaccttgaggaggagcacactccca 39327127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 16457888 - 16457832
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| |||| ||| |||||||||||||||||||||| |||| || | ||||||||    
T  16457888 gagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaatacc 16457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 29075863 - 29075819
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||| ||| | || ||||||||||||||||||||    
T  29075863 cagagagaatcgaacatgagatctcgaggaggagcacactcccag 29075819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 30109308 - 30109348
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  30109308 gaatcgaacctgagacctcaaggaggagcacactcccaggt 30109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 35796614 - 35796654
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  35796614 agagggaatcgaacctgaaatcatgaggaggagcacactcc 35796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 41730623 - 41730583
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  41730623 agagagaatcgaacatgataccttgaggtggagcacactcc 41730583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 19956 - 20016
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||    
T  19956 cagagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaatacc 20016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 12988510 - 12988450
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  12988510 cagagaggatcgaacctgaaaccttgaggaggagcacacttccaggttccaagccaatacc 12988450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 33017296 - 33017238
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||    
T  33017296 cagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 13129750 - 13129693
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaat 63  Q
    ||||||||||||||||||||||||||||||||||| |||||||| || || |||||||    
T  13129750 cagagagaatcgaacctgaaaccttgaggaggagcgcactcccaagtcccaaaccaat 13129693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 8794339 - 8794399
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||||||||    
T  8794339 cagagagaatcgaacctgagaccctgaggaggagcacacttccaggttccaagccaatacc 8794399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 31408117 - 31408156
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31408117 agagagaatcgaacctgaaaccttgaggaggagcacactc 31408156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 968442 - 968384
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| || | ||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 968384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 3624660 - 3624602
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| || | ||||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaatacc 3624602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 6536602 - 6536542
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||| || | ||||||||    
T  6536602 cagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatacc 6536542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 16852418 - 16852362
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| |||| |||||||||||||||||||||| || | ||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 16852362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 18540380 - 18540320
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||| || | ||||||||    
T  18540380 cagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaatacc 18540320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 19703485 - 19703541
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| || | ||||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacc 19703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 22193360 - 22193403
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  22193360 gagagaatcgaacctaagaccttgaggaggagcacactcccagg 22193403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 23361643 - 23361686
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  23361643 cagagagaattgaacctgagaccttgaggaggagcacactccca 23361686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 11819857 - 11819815
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  11819857 agagtgaatcgaacctgagaccttgaggaggagcacactccca 11819815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27750811 - 27750769
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  27750811 agagggaatcgaacctgagaccttgaggaggagcacactccca 27750769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 28783138 - 28783096
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  28783138 gagaatcgaacatgagaccttgaggaggagcacactcccaggt 28783096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2203570 - 2203514
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| || ||||| ||||||||||||||||||||||||||| || | ||||||||    
T  2203570 gagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 2203514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 35690058 - 35690102
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| |||||||||||||||| || |||||    
T  35690058 cagagagaatcgaacctgagaccttgaggaggagcaaacacccag 35690102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 36205273 - 36205233
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  36205273 gagaatcgaacatgagaccttgaggaggagcacactcccag 36205233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 35287796 - 35287757
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  35287796 gagagaatcgaacatgataccttgaggaggagcacactcc 35287757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 11928730 - 11928772
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactcccaggtt 53  Q
    |||||||||||||| |||| ||||||||||||||| |||||||    
T  11928730 agaatcgaacctgagacctcgaggaggagcacacttccaggtt 11928772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 29858049 - 29858103
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||| |||| |||||||||||||||||| ||| || | ||||||||    
T  29858049 gaatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaatacc 29858103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 33727868 - 33727906
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacact 45  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  33727868 agagggaatcgaacctgagaccttgaggaggagcacact 33727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 44780109 - 44780151
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||    
T  44780109 agagggaatcaaacctgagaccttgaggaggagcacactccca 44780151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 3058046 - 3058103
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||| ||||||  |||||||||||||||| |  || ||||||||||    
T  3058046 agagaatcgaacctgagaccttgcagaggagcacactcccaagacccaaaccaatacc 3058103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 3721153 - 3721194
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||||||||| | |||||||||||||||||||    
T  3721153 gagaaaatcgaacctgaaacatcgaggaggagcacactccca 3721194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 6569768 - 6569809
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  6569768 agagaatcgaacatgaaacctaaaggaggagcacactcccag 6569809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 16843790 - 16843831
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||| | |||| |||||||||||||||||    
T  16843790 gagagaatcgaacctgagatcttgcggaggagcacactccca 16843831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 35641897 - 35641938
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  35641897 gagagaatcgaacctgagacatcgaggaggagcacactccca 35641938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 21566781 - 21566817
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||||||| |||||||| |||||||||||||    
T  21566781 agaatcgaacctgagaccttgagtaggagcacactcc 21566817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 43594313 - 43594349
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcaca 43  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  43594313 agagagaatcgaacctgagaccttgaggaggaacaca 43594349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 52)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 2962541 - 2962481
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||    
T  2962541 cagagagaatcgaacctgagatcttgaggaggagcacactcacaggttccaaaccaatacc 2962481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 26459404 - 26459464
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 26459464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 7721451 - 7721391
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||| || ||||||||||    
T  7721451 cagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaatacc 7721391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 43215265 - 43215206
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||| |||||||||||||||||||||| |||| || | ||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 43215206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 22760941 - 22760899
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggt 22760899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 27313728 - 27313782
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaacc 60  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  27313728 cagagagaatcgaatctgaaaccttgaggaggagcaaactcccaagttccaaacc 27313782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 5830598 - 5830655
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    ||||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||||    
T  5830598 agagataatcgaacttgaaatcttgaggaggagtacactcccaggttccaaaccaata 5830655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23552199 - 23552154
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  23552199 agagagaatcgaacttgagaccttgaggaggagcacactcccaggt 23552154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 17113877 - 17113829
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttc 54  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  17113877 cagagagaatcgaacttgagaccttgaggagaagcacactcccaggttc 17113829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 25655222 - 25655262
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  25655222 cagagagaatcgaacctgaaaccttgaggaggatcacactc 25655262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38851338 - 38851278
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| ||| |||| ||||||||||    
T  38851338 cagagagaatcaaacatgaaaccttgaggagaagcacactcacagattccaaaccaatacc 38851278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 14058333 - 14058286
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  14058333 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttcc 14058286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 14368361 - 14368314
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  14368361 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttcc 14368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 39631925 - 39631866
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||| |||||||||||||||  |||||||||| || | ||||||||    
T  39631925 agagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaatacc 39631866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 2883032 - 2882986
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||    
T  2883032 cagagagaattgaacctgagaccttgaggaggagcacactccaaggt 2882986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 17041008 - 17041050
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccag 17041050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 18363777 - 18363735
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  18363777 agagagaatcaaacctgagaccttgaggaggagcacactccca 18363735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 13106776 - 13106817
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  13106776 cagagagaatcgaacctgagaccttgaggaggagtacactcc 13106817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 15137635 - 15137594
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  15137635 cagagagaatctaacctgagaccttgaggaggagcacactcc 15137594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 21558210 - 21558173
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcaca 43  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  21558210 cagagagaatcgaacctgagaccttgaggaggagcaca 21558173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 27376751 - 27376796
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||    
T  27376751 cagagagaattgaaccagaaaccttgaggaggagcatactcccagg 27376796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 30442567 - 30442510
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||| | |||||||||||||||| |||||||||| || | ||||||||    
T  30442567 agagaatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaatacc 30442510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 41519258 - 41519299
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  41519258 cagagagaagcgaacctgagaccttgaggaggagcacactcc 41519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 9183185 - 9183229
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||| |||||||||||| || ||||||||||||||||||||||    
T  9183185 cagagataatcgaacctgagactttgaggaggagcacactcccag 9183229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 11700247 - 11700207
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  11700247 cagagagaatcgaacctgagaccttgaggaggagcaaactc 11700207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 20335829 - 20335885
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| |||| ||||||||||||||||||| || || | ||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacc 20335885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24438241 - 24438301
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||| |||||||||| || | ||||||||||||| || || ||||||||||    
T  24438241 cagagagaatcgaatctgaaaccttaagaaagagcacactcccaagtcccaaaccaatacc 24438301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 29916806 - 29916842
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||| |||||||||||||||||||||    
T  29916806 gagaatcgaacctgagaccttgaggaggagcacactc 29916842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33222452 - 33222392
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| |||||||||| ||| ||||| |||||| || | ||||||||    
T  33222452 cagagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaatacc 33222392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 43590985 - 43590929
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| || ||||||||||||||||||||| || || | ||||||||    
T  43590985 gagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaatacc 43590929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 9608624 - 9608667
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||||| | |||||||||||| ||||||||||    
T  9608624 agagagaatcgaacctgagatcttgaggaggaggacactcccag 9608667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 9836196 - 9836239
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||||| | |||||||||||| ||||||||||    
T  9836196 agagagaatcgaacctgagatcttgaggaggaggacactcccag 9836239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37085547 - 37085586
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  37085547 gagaatcgaacctgaaacctcgaggatgagcacactccca 37085586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 42712036 - 42711997
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  42712036 gagaatcgaacatgagaccttgaggaggagcacactccca 42711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 19553531 - 19553489
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||| |||||| | |||||||||||||||||||||||||||    
T  19553531 gagaattgaacctaagaccttgaggaggagcacactcccaggt 19553489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 20952145 - 20952203
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||| ||||||| |||| |  |||||||||||||||||||||||| || ||||||||||    
T  20952145 gagataatcgaatctgagattttgaggaggagcacactcccaggtcccaaaccaatacc 20952203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 29385740 - 29385778
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  29385740 agagaatcaaacctgagaccttgaggaggagcacactcc 29385778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 30579417 - 30579371
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||| |||||||||||| |||||||||||| | ||||||||||||    
T  30579417 cagagaaaatcgaacctgagaccttgaggaggtggacactcccaggt 30579371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 31835267 - 31835233
Alignment:
Q  13 aatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||||| ||||||||||||||||||||||    
T  31835267 aatcgaacctgagaccttgaggaggagcacactcc 31835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 33869439 - 33869485
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||||| || |||||||| ||||||||||| ||||||    
T  33869439 cagagagaatcgaaccagagaccttgagaaggagcacacttccaggt 33869485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7801253 - 7801216
Alignment:
Q  15 tcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggt 7801216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 18056773 - 18056810
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  18056773 gagaatcgaacctgagaccttcaggaggagcacactcc 18056810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 30217958 - 30217917
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||| ||| |||||||||||||||||||| ||||    
T  30217958 agagaatcgaacttgagaccttgaggaggagcacacttccag 30217917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 5934203 - 5934159
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||| ||||||||| ||||||||  |||||||||||||||||||    
T  5934203 cagagggaatcgaacatgaaacctcaaggaggagcacactcccag 5934159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 7309436 - 7309396
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccc 48  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  7309436 gagagaatcgaacttgagacctcgaggaggagcacactccc 7309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 7744106 - 7744150
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||||||| |||||||||||||||| | ||||||    
T  7744106 cagagagaatcaaacctgagaccttgaggaggagcatagtcccag 7744150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 11720958 - 11721014
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| |||| ||||| |||||||||||| |||||||| || | ||||||||    
T  11720958 gagaatcgaatctgataccttaaggaggagcacattcccaggtcccaagccaatacc 11721014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 15905672 - 15905727
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||  ||||||||||||||||||||| || | ||||||||    
T  15905672 gagaatcgaacctgagaccta-aggaggagcacactcccaggtcccaagccaatacc 15905727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 29785295 - 29785339
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||| |||||||||| ||| |||||||||||||||||||| ||||    
T  29785295 cagaaagaatcgaacatgagaccttgaggaggagcacacttccag 29785339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 30301957 - 30301925
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcaca 43  Q
    |||||||||||||| ||||||||||||||||||    
T  30301957 agaatcgaacctgagaccttgaggaggagcaca 30301925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 38374597 - 38374633
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||| | |||||||||||||||||||||    
T  38374597 gagaatcgaacctaagaccttgaggaggagcacactc 38374633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 41703333 - 41703369
Alignment:
Q  16 cgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  41703333 cgaacatgaaaccttgaggaggagcacactccaaggt 41703369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 29503349 - 29503293
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaatacc 29503293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 42327392 - 42327449
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 42327449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 42922497 - 42922436
Alignment:
Q  6 cagagagaatcgaacctgaaacctt-gaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||    
T  42922497 cagagagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaatacc 42922436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 40416384 - 40416433
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  40416384 cagagagaatcgaacctgagaccttaaggaggagcatactcccaggttcc 40416433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 4060208 - 4060268
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| | ||||||||| ||||||||| |||||| | ||||||||||    
T  4060208 cagagagaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaatacc 4060268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 4262298 - 4262342
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  4262298 gagagaatcgaacctgagaccttgaggaggagcacactgccaggt 4262342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 16918572 - 16918632
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||| | || ||||||||||    
T  16918572 cagagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaatacc 16918632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 21195671 - 21195719
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  21195671 agagggaatcgaacctgagaccttgaggaggagcacactcccaagttcc 21195719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 37480153 - 37480097
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| || | ||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacc 37480097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 19322849 - 19322790
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||| || ||||||||||    
T  19322849 agagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaatacc 19322790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 21303988 - 21304031
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  21303988 cagagagaatcgaacctgaaaccttcaggaggagcatactccca 21304031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 19244191 - 19244145
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||    
T  19244191 cagagagaatcgaacctgagaccttggggaggagcacactctcaggt 19244145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 39715070 - 39715028
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| |||| ||||||||||||||||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggt 39715028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 11062441 - 11062384
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    |||||||||| ||||||| ||||||||||| |||||||||||| ||||| | ||||||    
T  11062441 agagagaatcaaacctgagaccttgaggagaagcacactcccaagttccaagccaata 11062384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 13803577 - 13803536
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  13803577 cagagataatcgaacctgagaccttgaggaggagcacactcc 13803536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 11251169 - 11251109
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||| || || | ||||||||    
T  11251169 cagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaatacc 11251109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 14500359 - 14500315
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||    
T  14500359 cagagagaatcgaatctgagacctagaggaggagcacactcccag 14500315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 23052521 - 23052577
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||||||||| |||||||||||| || || | ||||||||    
T  23052521 gagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaatacc 23052577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 10449098 - 10449063
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10449098 gaatcgaacatgaaaccttgaggaggagcacactcc 10449063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 27244387 - 27244344
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||    
T  27244387 agagaatcgaaccttaaacctcgaggaggagcatactcccaggt 27244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 33839254 - 33839297
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||    
T  33839254 cagaaagaattgaacctgagaccttgaggaggagcacactccca 33839297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 6859307 - 6859349
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||| || |||| ||||||||||||||||    
T  6859307 agagagaatcgaacctgagactttgaagaggagcacactccca 6859349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 12086129 - 12086183
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| || |||||||||||||||||||| |||||| || | ||||||||    
T  12086129 gaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaatacc 12086183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 23230601 - 23230643
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||    
T  23230601 gagagaattgaacctggaactttgaggaggagcacactcccag 23230643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 42602634 - 42602576
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||| ||||| | |||||||| |||||||||||||||||| || | ||||||||    
T  42602634 gagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatacc 42602576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 4226144 - 4226111
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggag 39  Q
    |||||| |||||||||||||||||||||||||||    
T  4226144 cagagataatcgaacctgaaaccttgaggaggag 4226111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 6658463 - 6658406
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    |||||||||||||| ||| || |||||||| |||||||| ||||||| | ||||||||    
T  6658463 agagagaatcgaacatgagactttgaggagaagcacacttccaggttacaaaccaata 6658406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 7599978 - 7600015
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  7599978 agagaatcgaacatgaaacctcgaggaggagcacactc 7600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17737625 - 17737678
Alignment:
Q  13 aatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||| ||| |||||||||||||||||||||||| ||  | ||||||||||    
T  17737625 aatcgaacatgagaccttgaggaggagcacactcccaagtcacaaaccaatacc 17737678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 33582054 - 33582009
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||||||| ||||  ||||||||||||||| |||||    
T  33582054 agagagaatcgaacctgagacctcaaggaggagcacactctcaggt 33582009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 45026825 - 45026784
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  45026825 cagagagaatcaaacatgagaccttgaggaggagcacactcc 45026784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 11738038 - 11738078
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  11738038 cagagataatcgaacctgaaactttgaggaggaacacactc 11738078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 12497777 - 12497813
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcaca 43  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  12497777 agagagaatcgaatctgagaccttgaggaggagcaca 12497813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 12994376 - 12994416
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggt 12994416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 21213847 - 21213791
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||||  ||||||| ||||||||||||| || | ||||||||    
T  21213847 gagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaatacc 21213791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 30410543 - 30410603
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| |||||||| |||  ||||||||||||||||||||| |||| || | ||||||||    
T  30410543 cagagaaaatcgaacatgagtccttgaggaggagcacactcctaggtcccaagccaatacc 30410603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 34041582 - 34041622
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||| ||||| ||||||| |||||||||||||||||||||    
T  34041582 cagagggaatcaaacctgagaccttgaggaggagcacactc 34041622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 42860424 - 42860384
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||| ||| |||| ||||||||||||||||||||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggt 42860384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 8177176 - 8177220
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8177176 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 8177220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 33700767 - 33700827
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  33700767 cagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatacc 33700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 36371552 - 36371492
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  36371552 cagagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaatacc 36371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 51703861 - 51703801
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||    
T  51703861 cagagagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaatacc 51703801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 4566630 - 4566572
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||||    
T  4566630 cagagagaatcgaacctgagaccctgaggaggagcacactcccaggttccaagccaata 4566572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 3266006 - 3265957
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  3266006 cagagagaatcgaacctgagaccttgaggaggagcacactcccaagttcc 3265957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 2799944 - 2799900
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  2799944 cagagagaatcgaacctgagaccttgaggaggagcacactcccag 2799900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 1247195 - 1247148
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggtt 53  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  1247195 cagagagaatcgaacctgagaccttgaggaggagtacactcccaggtt 1247148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 16169976 - 16170018
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  16169976 gagaatcgaacctgaaaccttgaggaggaacacactcccaggt 16170018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 15786317 - 15786358
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccag 15786358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 9165189 - 9165249
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| |||||||| || |||||||||||||||||||||||| || | ||||||||    
T  9165189 cagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaatacc 9165249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 10526905 - 10526845
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||| || | ||||||||    
T  10526905 cagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaatacc 10526845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 21547474 - 21547534
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||||||||||| |||||||||||| |||||| || || | ||||||||    
T  21547474 cagagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaatacc 21547534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 1600286 - 1600329
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  1600286 cagagagaatcgaacctgaaactttaaggaggagcacactccca 1600329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 23566333 - 23566376
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  23566333 cagagagaatagaacctgaaacctttaggaggagcacactccca 23566376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 50920036 - 50919989
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggtt 53  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  50920036 cagagagaatcgaacctgaaaccttaaggatgagcacactctcaggtt 50919989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 6122875 - 6122833
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  6122875 agagggaatcgaacctgagaccttgaggaggagcacactccca 6122833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 38947471 - 38947509
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38947471 agaatcgaacctgagaccttgaggaggagcacactccca 38947509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 51814574 - 51814536
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactc 51814536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 8904496 - 8904456
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  8904496 cagagagaatcgaacttgagaccttgaggaggagcacactc 8904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 19528325 - 19528361
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactc 19528361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 29056460 - 29056404
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaa 62  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||||| || ||||||    
T  29056460 cagagataatcgaacctgaaaacttcaggatgagcacactcccaggtcccaaaccaa 29056404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 40810549 - 40810505
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  40810549 cagagagaatcgaacctgagaccttgaagaggaacacactcccag 40810505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 24047100 - 24047139
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  24047100 gagaatcgaacttgaaacctcgaggaggagcacactccca 24047139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 44961846 - 44961807
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  44961846 agagagaatcgaacctgagaccctgaggaggagcacactc 44961807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 2220052 - 2219994
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| |||| |||||| ||||||||  |||||||| | ||||||||    
T  2220052 gagagaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaatacc 2219994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 6650677 - 6650635
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccc 48  Q
    ||||||||||||||||||| || ||||||||||||| ||||||    
T  6650677 cagagagaatcgaacctgagacattgaggaggagcatactccc 6650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 12587350 - 12587312
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  12587350 gagagaatcgaacctgagacctcgaggaggagcacactc 12587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 52029935 - 52029977
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||    
T  52029935 gagaatcgaacctgagaccttgagaaggagcacactcctaggt 52029977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 14787331 - 14787376
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||||||||||||||||| ||||||||||| | ||||||| |||||    
T  14787331 agagagaatcgaacctgacaccttgaggagaaacacactctcaggt 14787376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 31383795 - 31383852
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||| |||   ||||||||||||||||||||| || | ||||||||    
T  31383795 agagaatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatacc 31383852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 43446041 - 43446004
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  43446041 gagaatcgaacatgagaccttgaggaggagcacactcc 43446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 45266912 - 45266875
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  45266912 gagaatcgaacctgagaccttgaggaggagcaaactcc 45266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 51281431 - 51281394
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacact 45  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  51281431 gagagaatcaaacctgagaccttgaggaggagcacact 51281394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 3799987 - 3799951
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcaca 43  Q
    ||||||||||||||||||||| | |||||||||||||    
T  3799987 agagagaatcgaacctgaaacttcgaggaggagcaca 3799951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 12370243 - 12370199
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||| ||| ||| |||| ||||||||||||||||||||||    
T  12370243 gagagaatcaaacatgagacctcgaggaggagcacactcccaggt 12370199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 17745250 - 17745310
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||| ||| |||| |||||||||||||| | ||||| || | ||||||||    
T  17745250 cagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaatacc 17745310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 21392911 - 21392879
Alignment:
Q  14 atcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||| |||||||||||||||||||||    
T  21392911 atcgaacctgagaccttgaggaggagcacactc 21392879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 22049822 - 22049862
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    |||||||||||||| || ||||||||||||| |||||||||    
T  22049822 cagagagaatcgaatctcaaaccttgaggagaagcacactc 22049862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 27223128 - 27223168
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||| ||||||| || ||||||||||||||    
T  27223128 gagaatcgaacctgagaccttgaagaagagcacactcccag 27223168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 27567117 - 27567165
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||| ||||||| |||| ||||||| ||||||||||||| ||||||||    
T  27567117 agagaaaatcgaatctgagaccttgaagaggagcacactctcaggttcc 27567165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 40814403 - 40814443
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  40814403 agagagaatcgaacctgaaacctcaaggatgagcacactcc 40814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 52116779 - 52116835
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| |||||||| || ||||||||||||||||||||| || || | ||||||||    
T  52116779 gagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaatacc 52116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 52336768 - 52336812
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||| |||||||||||| | ||| |||||||||||||||||||    
T  52336768 cagagataatcgaacctgagatcttaaggaggagcacactcccag 52336812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 12188298 - 12188357
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||    
T  12188298 agagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatacc 12188357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 33549184 - 33549126
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| || | ||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 33549126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 23910108 - 23910151
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  23910108 agagattcgaacctgagaccttgaggaggagcacactcccaggt 23910151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 10338174 - 10338228
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||| |||||||||||||||||||||| |||| || | ||||||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatacc 10338228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 17328258 - 17328304
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  17328258 cagagagaatcgaacctgaaaccttgaagaggagcatactctcaggt 17328304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 20213122 - 20213077
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||    
T  20213122 agagggaatcgaacctgagacattgaggaggagcacactcccaggt 20213077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 22107145 - 22107100
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||    
T  22107145 agagggaatcgaacctgagacattgaggaggagcacactcccaggt 22107100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 6385942 - 6385898
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  6385942 gagagaatcgaacctgagaccttaaggaggagcacagtcccaggt 6385898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 24641188 - 24641228
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  24641188 gagaatcgaaccttaaacctcgaggaggagcacactcccag 24641228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 28364019 - 28363959
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||| | || ||||||||||    
T  28364019 cagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaatacc 28363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 15951296 - 15951339
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||    
T  15951296 cagagagaattgaacatgagaccttgaggaggagcacactccca 15951339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 28841494 - 28841455
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  28841494 gagagaatcgaacttgagaccttgaggaggagcacactcc 28841455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 14278105 - 14278151
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  14278105 cagagagaatcaaacctgagaccttaaggaggagcgcactcccaggt 14278151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 16405163 - 16405109
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    |||||||||| |||| |||| |||||| ||||||||||||||| || ||||||||    
T  16405163 gagaatcgaaactgagacctcgaggagaagcacactcccaggtcccaaaccaata 16405109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 19638001 - 19638047
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    |||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  19638001 agagaatcaaacctgagaccttgagctggagcacactcccaggttcc 19638047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 11306168 - 11306213
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    ||||||||||||||||||| ||||||| || ||||| |||||||||    
T  11306168 cagagagaatcgaacctgagaccttgaagatgagcatactcccagg 11306213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 12216823 - 12216766
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||||||| |||| ||| ||||||||| || ||||| || ||||||||||    
T  12216823 agagaatcgaacctgagacctcgagaaggagcacattcgcaggtcccaaaccaatacc 12216766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 14199947 - 14199984
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  14199947 gaatcgaatctgagaccttgaggaggagcacactccca 14199984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 16535263 - 16535226
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||||||| || |||||||||||||||    
T  16535263 agagaatcgaacctgaaacttttaggaggagcacactc 16535226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 27989651 - 27989700
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    |||||| |||||||||||||||||| || ||||||| ||||||| |||||    
T  27989651 cagagataatcgaacctgaaaccttaagaaggagcatactcccaagttcc 27989700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 6691547 - 6691590
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  6691547 gagagaatcgaacctgagaccttga-gaggagcacactccaaggt 6691590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 12234503 - 12234547
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| |||| |||  |||||||||||||||||    
T  12234503 gagagaatcgaacctgagacctcgagagggagcacactcccaggt 12234547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 19162863 - 19162823
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccc 48  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  19162863 gagagaatcgaacctgagatctcgaggaggagcacactccc 19162823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 20863456 - 20863416
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  20863456 agagagaatcaaatctgagaccttgaggaggagcacactcc 20863416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31622997 - 31623045
Alignment:
Q  18 aacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||| |||| |||||||||||||||||||||| || | ||||||||    
T  31622997 aacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 31623045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 34444881 - 34444845
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactc 46  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  34444881 gagaatcgaacctgagaccttggggaggagcacactc 34444845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 94965 - 95025
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  94965 cagagataattgaacctgagaccttgaggaggagcacactcccaggttccaagccaatacc 95025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 16354886 - 16354946
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||||||| | ||||||||    
T  16354886 cagagagaatcgaacctgagaccctgaggaggagcacactcacaggttccaagccaatacc 16354946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 27093355 - 27093415
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||| | ||||||||    
T  27093355 cagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaatacc 27093415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 37788460 - 37788508
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  37788460 agagagaatcgaacctgagaccttgaggaggagcacactcctaggttcc 37788508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 46518710 - 46518666
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  46518710 cagagagaatcaaacctgaaaccttgaggaggagcacactcccag 46518666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 53413027 - 53412967
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| | | ||||||||    
T  53413027 cagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaatacc 53412967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 8075122 - 8075164
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  8075122 agagggaatcgaacctgaaaccttgaggaggagcacactccca 8075164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 10445133 - 10445179
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  10445133 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggt 10445179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 27259243 - 27259197
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  27259243 cagagagaatcaaacctgaaacctcgaggaggagcacactcccaggt 27259197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 36720462 - 36720420
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36720462 agagagaatcgaacctgaaacctcgaggaggagcacactccca 36720420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 30311385 - 30311344
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccag 30311344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30715822 - 30715781
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  30715822 gagagaatcgaacctgaaacattgaggaggagcacactccca 30715781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 28703398 - 28703442
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  28703398 cagagagaatcgaacctgagaccttgaagaggagcacactcccag 28703442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 39253779 - 39253735
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  39253779 cagagagaatcgaacctgagaccttgaagaggagcacactcccag 39253735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 3427548 - 3427591
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  3427548 agagagaatcgaatctgagaccttgaggaggagcacactcccag 3427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 14186727 - 14186688
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  14186727 gagagaatcgaacctgagaccttgaggaggagcacactcc 14186688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 32651433 - 32651492
Alignment:
Q  7 agagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||| || | ||||||||    
T  32651433 agagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaatacc 32651492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 51766975 - 51766933
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  51766975 gagagaatcgaatctgaaaccttgaggaagagcacactcccag 51766933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 4222223 - 4222179
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||| | || ||||||||||||||||||||||    
T  4222223 cagagagaatcgaacctaagactttgaggaggagcacactcccag 4222179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 8501571 - 8501611
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  8501571 gagaattgaacctgaaactttgaggaggagcacactcccag 8501611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 15048055 - 15048099
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||    
T  15048055 cagagataatcgaacctgagaccttgaggaggagcacattcccag 15048099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 20501776 - 20501732
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||    
T  20501776 gagagaatcgaacctgagaccttaaggaggagcacactctcaggt 20501732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 26482007 - 26481963
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||    
T  26482007 gagagaatcgaacctaaaactttgaggaggagcacactctcaggt 26481963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 33899693 - 33899653
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  33899693 agagaatcgaacctgagacctagaggaggagcacactccca 33899653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 36010824 - 36010776
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttc 54  Q
    ||||||||||||||| ||| || ||||||||||||||||||||| ||||    
T  36010824 cagagagaatcgaacttgagactttgaggaggagcacactcccatgttc 36010776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 47236969 - 47237025
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||| || ||||||||||    
T  47236969 gagaatcgaacatgagaccttgaagaggagcacactcccgggtcccaaaccaatacc 47237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 8796087 - 8796130
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||    
T  8796087 cagagagaatcgaacttgagaccttgaggaggagcatactccca 8796130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 14339688 - 14339649
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  14339688 gagaatcgaacctgagacattgaggaggagcacactccca 14339649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 17108896 - 17108935
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  17108896 gagaatcaaacctgagaccttgaggaggagcacactccca 17108935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 17765203 - 17765164
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  17765203 gaatcgaacctgagatcttgaggaggagcacactcccagg 17765164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 19066523 - 19066484
Alignment:
Q  12 gaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  19066523 gaatcgaacctgagatcttgaggaggagcacactcccagg 19066484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 4844507 - 4844549
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccag 4844549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 4870203 - 4870245
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccag 4870245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 19154710 - 19154668
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccagg 51  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||    
T  19154710 agagaatcgaacctgagacctttaggaggagcacactctcagg 19154668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 21960631 - 21960573
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||| || | ||||||||    
T  21960631 gagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaatacc 21960573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 44743851 - 44743893
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||| |||||||||||| |||| ||||||||||||||||||||    
T  44743851 gagataatcgaacctgagacctcgaggaggagcacactcccag 44743893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 51903874 - 51903916
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||| |||  ||||||||||||||||||||    
T  51903874 gagagaatcgaacctgagaccacgaggaggagcacactcccag 51903916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 54990780 - 54990738
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggt 52  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||    
T  54990780 gagaatcgaacctgagaccttgaggaggagcacgctccaaggt 54990738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 8170747 - 8170694
Alignment:
Q  13 aatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    |||||||||||| |||||||| ||||||||||||||| ||| | | ||||||||    
T  8170747 aatcgaacctgagaccttgagtaggagcacactcccaagtttcaagccaatacc 8170694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 19716275 - 19716238
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||||||||| || ||||||||||||||||||||||    
T  19716275 gagaatcgaaccagagaccttgaggaggagcacactcc 19716238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 47454615 - 47454652
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactcc 47454652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 52769980 - 52770021
Alignment:
Q  9 agagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  52769980 agagaatcgaacctgagacctcaaggaggagcacactcccag 52770021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 11612373 - 11612337
Alignment:
Q  14 atcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  11612373 atcgaacctgagaccttaaggaggagcacactcccag 11612337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 18319182 - 18319222
Alignment:
Q  26 accttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||| ||||||||||||||||||| || ||||||||||    
T  18319182 accttgaagaggagcacactcccaggtcccaaaccaatacc 18319222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 31608518 - 31608562
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||| || |||| |||| ||||||||||||||||||||    
T  31608518 cagagagaatcaaatctgagacctcgaggaggagcacactcccag 31608562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 31788964 - 31789008
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    |||||| |||| ||||| |||||| ||||||||||||||||||||    
T  31788964 cagagataatcaaacctaaaacctcgaggaggagcacactcccag 31789008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 44069835 - 44069799
Alignment:
Q  11 agaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  44069835 agaatcaaacctgagaccttgaggaggagcacactcc 44069799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 49452944 - 49452912
Alignment:
Q  17 gaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||||| ||||||||||||||||||||||||    
T  49452944 gaacctgagaccttgaggaggagcacactccca 49452912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15319 - 15377
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaatacc 66  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| || | ||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 15377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 13042 - 13084
Alignment:
Q  8 gagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccag 13084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 18381 - 18332
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccaggttcc 55  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||    
T  18381 cagagagaatcaaacctgaaaccttgaggaggagcacaatcccagattcc 18332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 11610 - 11566
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  11610 cagagagaatcgaacctgagacctcgaggaggagcacactcccag 11566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 2468 - 2508
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccag 50  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  2468 gagaatcgaacctgagaccttgaggaggagcacactcccag 2508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 81562 - 81616
Alignment:
Q  10 gagaatcgaacctgaaaccttgaggaggagcacactcccaggttcctaaccaata 64  Q
    |||||||||| |||| |||||||||||||||||||| |||| |||| ||||||||    
T  81562 gagaatcgaatctgagaccttgaggaggagcacacttccagattccaaaccaata 81616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 2705 - 2746
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactcc 47  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  2705 cagagagaatcgaacctgagaccttgaggaggagcagactcc 2746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5275 - 5232
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    ||||||||||||||||| |||| || ||||||||||||||||||    
T  5275 cagagagaatcgaacctaaaactttaaggaggagcacactccca 5232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 25341 - 25384
Alignment:
Q  6 cagagagaatcgaacctgaaaccttgaggaggagcacactccca 49  Q
    |||||| |||||||||||| |||||||| |||||||||||||||    
T  25341 cagagataatcgaacctgagaccttgagaaggagcacactccca 25384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University