View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_high_17 (Length: 240)
Name: NF11536_high_17
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52879837 - 52879615
Alignment:
| Q |
1 |
cttgtgcaacaaggaaaaacaaattagtacagtagtatataaatgagccatcttttgtatactaaacatacccaattaagtaagaaaaatctttattagt |
100 |
Q |
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| T |
52879837 |
cttgtgcaacaaggaaaaacaaattagtacagtagtata-aaatgagccatcttttgtatactaaacatacccaattaagtaagaaaaatctttattagt |
52879739 |
T |
|
| Q |
101 |
acattgaagattaaaatgaccttgtaaggtttaattacatatatggatcaccaaaaggatccatattttgtagcacggtgtgtcactatctaatgcagca |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52879738 |
acattgaagattaaaatgaccttataaggtttaattacatatatggatcaccaaaaggatccatattttgtagcacggtgtgtcactatctaatgcagca |
52879639 |
T |
|
| Q |
201 |
agctagttgatcaacaaaccatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
52879638 |
agctagttgatcaacaaaccatat |
52879615 |
T |
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