View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_high_19 (Length: 205)
Name: NF11536_high_19
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 39512610 - 39512419
Alignment:
| Q |
1 |
caacaaaagtcagattccaatcattccatgnnnnnnnn-ctaacatttacttaataccattttggtccatttgatgacccattaaatatattcaagatta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512610 |
caacaaaagtcagattccaatcattccatgaaacaaaaactaacatttacttaataccattttggtccatttgatgacccattaaatatattcaagatta |
39512511 |
T |
|
| Q |
100 |
agaatgaaaaagttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaactacatacatggtcaccctttg |
191 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512510 |
agaatgaaaaggttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaactacatacatggtcaccctttg |
39512419 |
T |
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