View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11536_high_2 (Length: 715)

Name: NF11536_high_2
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11536_high_2
NF11536_high_2
[»] chr2 (1 HSPs)
chr2 (17-700)||(13795102-13795785)


Alignment Details
Target: chr2 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 17 - 700
Target Start/End: Original strand, 13795102 - 13795785
Alignment:
Q  17 gaacattgaagaaacaaggaatcttcctgaagggattagaagcctggcttgcactttggacttgcaggctgcttgccatccatccatgaaagcctgcagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13795102 gaacattgaagaaacaaggaatcttcctgaagggattagaagcctggcttgcactttggacttgcaggctgcttgccatccatccatgaaagcctgcagg 13795201  T
Q  117 taaatgtataacaaataaggacgatattaacgctgacacaaattcgaatactgaggacgacattaatgctgacatgtaaacaacattaataattaagaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13795202 taaatgtataacaaataaggacgatattaacgctgacacaaattcgaatactgaggacgacattaatgctgacatgtaaacaacattaataattaagaaa 13795301  T
Q  217 atggttgaatgtaattacatttgtcactatagatatggacgtgtatcggacaccaaacatgtattcgatttgaagtgaaggtgtaacatagactttacct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13795302 atggttgaatgtaattacatttgtcactatagatatggacgtgtatcggacaccaaacatgtattcgatttgaagtgaaggtgtaacatagagtttacct 13795401  T
Q  317 attatacattgtgaggtcatgcaaaaattgcttggttgattttattttatcctatgaattctgttttggttggtcattttgaatttgattcaccgtcctt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13795402 attatacattgtgaggtcatgcaaaaattgcttggttgattttattttatcctatgaattctgttttggttggtcattttgaatttgattcactgtcctt 13795501  T
Q  417 atgatttcttaacatttttcaaaccatattatagatacaaaagtatctattgacgtttaaccgtgactaatatttaaagaacctgtagggtatgcgtaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13795502 atgatttcttaacatttttcaaaccatattatagatacaaaagtatctattgacgtttaaccgtgactaatatttaaagaacctgtagggtatgcgtaat 13795601  T
Q  517 gtattttctctcgcaaccggttttctgacaaatcgtttgcataaggtggaaagaaaggcataagaataccagtttcttcatctacttttccatgttttca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13795602 gtattttctctcgcaaccggttttctgacaaatcgtttgcataaggtggaaagaaaggcataagaataccagtttcttcatctgcttttccatgttttca 13795701  T
Q  617 aattttgaagttttaatcatacaacatttgattccaagatgcaaattagtctaatcatgaagctttgtctattatgttgtcatt 700  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13795702 aattttgaagttttaatcatacaacatttgattctaagatgcaaattagtctaatcatgaagctttgtctactatgttgtcatt 13795785  T

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