View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11536_high_4 (Length: 551)

Name: NF11536_high_4
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11536_high_4
NF11536_high_4
[»] chr6 (2 HSPs)
chr6 (20-231)||(4915404-4915615)
chr6 (240-426)||(28889748-28889936)
[»] chr4 (2 HSPs)
chr4 (232-426)||(54938826-54939020)
chr4 (235-426)||(54937788-54937960)
[»] chr7 (2 HSPs)
chr7 (232-426)||(13077489-13077683)
chr7 (235-426)||(13078550-13078741)
[»] chr3 (5 HSPs)
chr3 (232-426)||(39984801-39984995)
chr3 (235-426)||(41968188-41968378)
chr3 (234-426)||(39983742-39983934)
chr3 (20-229)||(1505650-1505865)
chr3 (239-345)||(14414236-14414340)
[»] chr2 (9 HSPs)
chr2 (232-426)||(14684515-14684709)
chr2 (232-426)||(21306371-21306565)
chr2 (235-426)||(14685576-14685767)
chr2 (235-426)||(30246417-30246608)
chr2 (232-426)||(40421339-40421533)
chr2 (235-426)||(4517243-4517434)
chr2 (235-426)||(21307428-21307619)
chr2 (235-417)||(40422407-40422589)
chr2 (20-231)||(28025714-28025928)
[»] chr1 (4 HSPs)
chr1 (232-426)||(8090038-8090232)
chr1 (235-426)||(27962617-27962808)
chr1 (252-426)||(172877-173051)
chr1 (235-426)||(48907301-48907492)
[»] chr8 (8 HSPs)
chr8 (235-426)||(45036163-45036354)
chr8 (235-426)||(6540576-6540769)
chr8 (235-426)||(13255524-13255714)
chr8 (20-231)||(3011338-3011552)
chr8 (20-231)||(2921867-2922081)
chr8 (20-229)||(2931217-2931426)
chr8 (130-231)||(2947868-2947969)
chr8 (74-231)||(37796716-37796873)
[»] chr5 (1 HSPs)
chr5 (258-363)||(5033188-5033290)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 4915404 - 4915615
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtggatacagacctccttcgaagtcattcttaattggttcatggttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915404 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtggatacagacctccttcgaagtcattcttaattggttcatggttg 4915503  T
Q  120 gaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaa 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915504 gaaaaacttctgcaaagtggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaa 4915603  T
Q  220 cagttggagtga 231  Q
    ||||||||||||    
T  4915604 cagttggagtga 4915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 240 - 426
Target Start/End: Original strand, 28889748 - 28889936
Alignment:
Q  240 gaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatg 339  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  28889748 gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataatatcgcagaactttgagggtctgcaactccctaatgccaaaatg 28889847  T
Q  340 gccccttcccagtcaaatcctcagatg--cccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
     ||||||||||||||||||||||||||   ||  |||||||||||||| | ||||||||||||||||| | ||||| ||||||||||||    
T  28889848 accccttcccagtcaaatcctcagatgattccaccaatcttcccatctattccctatttattcttaaagcataaccacccactactgac 28889936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 54938826 - 54939020
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54938826 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattg 54938925  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54938926 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 54939020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 54937788 - 54937960
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  54937788 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcta 54937887  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54937888 aaatggccccttcccag-------------------tcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 54937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 426
Target Start/End: Complemental strand, 13077683 - 13077489
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077683 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 13077584  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13077583 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 13077489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 235 - 426
Target Start/End: Complemental strand, 13078741 - 13078550
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13078741 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataatattgcagaacttcgagggtctgcacctccctattgcca 13078642  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  13078641 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctccccaatttattcttaaaacttaacctcccactactgac 13078550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 39984801 - 39984995
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984801 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 39984900  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39984901 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 39984995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 41968188 - 41968378
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacaga-taatattgcagaacttcgagggtctgcacctccctattgcca 41968286  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968287 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 41968378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 234 - 426
Target Start/End: Original strand, 39983742 - 39983934
Alignment:
Q  234 ttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 333  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983742 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39983841  T
Q  334 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39983842 taaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 39983934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1505650 - 1505865
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgt------ggatacagacctccttcgaagtcattcttaattggttca 113  Q
    |||| ||| ||||||| || || ||||| | ||||  ||||||||||||||||||      |||||||  ||||| || ||||||||||||||||| |||    
T  1505650 accacagaggttcttggaatgcataaaaaagggcaactggcttaaagttacatgtagtaatggatacatgcctccctcaaagtcattcttaattggctca 1505749  T
Q  114 tggttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagt 213  Q
    |  |||   ||| || ||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||| ||| ||||    
T  1505750 tcattgcggaaaattttgcaaagtggttcatttcttgttgacattcccctgattgacgagagcttctacgggaatagaataaatgagtacacagaagagt 1505849  T
Q  214 tgaaaacagttggagt 229  Q
    |||||| ||| |||||    
T  1505850 tgaaaatagtcggagt 1505865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 14414340 - 14414236
Alignment:
Q  239 agaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaat 338  Q
    |||||||||||||||||||||||  |||||||| |||||  |||| ||||||||| |||| |||||||||| ||||||||||| |||||| | |||||||    
T  14414340 agaaaccaactgatatagaagaaggaaataggggaaatc--tttgtttacagaatgatatggcagaacttctagggtctgcacgtccctaatcccaaaat 14414243  T
Q  339 ggcccct 345  Q
    |||||||    
T  14414242 ggcccct 14414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 426
Target Start/End: Complemental strand, 14684709 - 14684515
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684709 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 14684610  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14684609 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 14684515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 426
Target Start/End: Complemental strand, 21306565 - 21306371
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306565 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 21306466  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21306465 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 21306371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 235 - 426
Target Start/End: Complemental strand, 14685767 - 14685576
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 14685668  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14685667 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 14685576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 235 - 426
Target Start/End: Complemental strand, 30246608 - 30246417
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246608 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 30246509  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30246508 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 30246417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 232 - 426
Target Start/End: Complemental strand, 40421533 - 40421339
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40421533 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaatattgcagaacttcgagggtctgcacctccctattg 40421434  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40421433 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 40421339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 4517243 - 4517434
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacatcgagggtctgcacctccctattgcca 4517342  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4517343 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 4517434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 235 - 426
Target Start/End: Complemental strand, 21307619 - 21307428
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 21307520  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21307519 aaaaggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 21307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 235 - 417
Target Start/End: Complemental strand, 40422589 - 40422407
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40422589 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 40422490  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctccc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40422489 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctccc 40422407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 28025928 - 28025714
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttac----atgtggatacagacctccttcgaagtcattcttaattggttcatg 115  Q
    |||||||| ||| |||||| |  ||||||| ||||| ||||||||||||||    || ||||||||| |||||||| ||||| ||||||||| | ||       
T  28025928 accagagaggtttttgaaatgtataaaagatggcagctggcttaaagttaccgtcat-tggatacaggcctccttcaaagtcgttcttaattcgctcgcc 28025830  T
Q  116 gttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttg 215  Q
     |||| |||| || ||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||  |||| ||||||    
T  28025829 attgggaaaatttttgcaaagtggttcagttcttgttgatatccccctgattgacgagagcttctatggggatagaataaacaagtatgaagaagagttg 28025730  T
Q  216 aaaacagttggagtga 231  Q
    ||||| || |||||||    
T  28025729 aaaactgtaggagtga 28025714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 8090038 - 8090232
Alignment:
Q  232 agttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090038 agttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattg 8090137  T
Q  332 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8090138 ccaaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 8090232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 27962617 - 27962808
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 27962716  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27962717 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 27962808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 252 - 426
Target Start/End: Original strand, 172877 - 173051
Alignment:
Q  252 tatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccag 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172877 tatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccag 172976  T
Q  352 tcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172977 tcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 173051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 48907301 - 48907492
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48907301 tgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattacca 48907400  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48907401 aaatggccccttcccagtcaaatccttagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 48907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 45036163 - 45036354
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45036163 tgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 45036262  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45036263 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 45036354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 6540576 - 6540769
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgc-- 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||      
T  6540576 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 6540675  T
Q  333 caaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6540676 caaaatggccccttcccagtcaagtcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 6540769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 235 - 426
Target Start/End: Complemental strand, 13255714 - 13255524
Alignment:
Q  235 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 334  Q
    ||||||||||||||||||||||||||||||| | || ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13255714 tgatagaaaccaactgatatagaagaataaatttggtaaattcc-tttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 13255616  T
Q  335 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatctctcccctatttattcttaaaacttaacctcccactactgac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13255615 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatccctcccctatttattcttaaaacttaacctcccactactgac 13255524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 3011338 - 3011552
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtg---gatacagacctccttcgaagtcattcttaattggttcatgg 116  Q
    |||||||| ||||||| || || |||||| |||||  ||||||||||||||| ||    ||||||  |||||||| ||||||||||||||||| | ||      
T  3011338 accagagaagttcttggaatgcttaaaaggaggcaactggcttaaagttacaggtaatagatacatgcctccttcaaagtcattcttaattggcttatca 3011437  T
Q  117 ttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttga 216  Q
    |||| ||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  3011438 ttgggaaaacttttgcaaagtggtttagtacttgttgacattcccctgattgatgagagcttctatggggatagaataaatgaatacaaagaggagttga 3011537  T
Q  217 aaacagttggagtga 231  Q
    ||||| |||||||||    
T  3011538 aaacaattggagtga 3011552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 2922081 - 2921867
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacat---gtggatacagacctccttcgaagtcattcttaattggttcatgg 116  Q
    |||||||| ||| |||||| |  |||||||  | || |||||||||||||||    ||| || ||| |||||||| ||||||||||||||| | | |       
T  2922081 accagagaggtttttgaaatgtataaaagatcgtagctggcttaaagttacagccggtgaattcaggcctccttcaaagtcattcttaattcgctaacca 2921982  T
Q  117 ttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttga 216  Q
    ||||  ||| || ||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  2921981 ttggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacggggataaaataaataagtatgaagaggagttga 2921882  T
Q  217 aaacagttggagtga 231  Q
    ||||| |||||||||    
T  2921881 aaacaattggagtga 2921867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 2931426 - 2931217
Alignment:
Q  20 accagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgt---ggatacagacctccttcgaagtcattcttaattggttcatgg 116  Q
    |||||||| |||||||  | || ||||||||||||| ||||||||||||||  ||   |||| ||   ||||||| ||||||||||||||||||||||      
T  2931426 accagagaggttcttggcatgcataaaagaaggcagctggcttaaagttacgggtaatggattcatgtctccttcaaagtcattcttaattggttcat-- 2931329  T
Q  117 ttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttga 216  Q
     ||| |||  || ||||||| |||||||||||||| || |||||| | || ||||| ||||||||||| || ||||||||| ||||||||||||| ||||    
T  2931328 -tgggaaatattttgcaaagtggttcagttcttgtggatattcccttaatagatgaaagcttctatggagagagaataaatgagtacaaagaggaattga 2931230  T
Q  217 aaacagttggagt 229  Q
    ||||| |||||||    
T  2931229 aaacaattggagt 2931217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 2947969 - 2947868
Alignment:
Q  130 tgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagt 229  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||| |||| |||||||||    
T  2947969 tgcaaagtggttcagatcttgttgacatccccctgattgatgagagcttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagt 2947870  T
Q  230 ga 231  Q
    ||    
T  2947869 ga 2947868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 37796873 - 37796716
Alignment:
Q  74 tggatacagacctccttcgaagtcattcttaattggttcatggttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgag 173  Q
    ||||||||| |||||||| ||||| ||||||||| | ||    ||||  ||| || ||||||| ||||| || |||||||| || ||||| |||||||||    
T  37796873 tggatacagtcctccttcaaagtcgttcttaattcgctcgccattggggaaaattttgcaaagtggttcggtgcttgttgatatccccctcattgatgag 37796774  T
Q  174 agcttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtga 231  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||| |||||||||    
T  37796773 agcttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtga 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 5033290 - 5033188
Alignment:
Q  258 agaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtcaaat 357  Q
    ||||||||||||||||| ||||||||||||||||| || ||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  5033290 agaataaaatagggaaa-tccctttgattacagaa-aacatcacagaactttgaggctctgcacctccctat-gccaaaatggccccttcccagtcaaat 5033194  T
Q  358 cctcag 363  Q
    ||||||    
T  5033193 cctcag 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University