View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_high_8 (Length: 398)
Name: NF11536_high_8
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 21322174 - 21322021
Alignment:
| Q |
1 |
caaaagtttattaacaaatatgaaggttacacatgaactgacttaaaaacaataactaaaattgtggatggaaaacttttaggagtctaaaagtcgaagg |
100 |
Q |
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| T |
21322174 |
caaaagtttattaacaaatatgaaggttacacatgaactgacttaaaaacaataactaaaattgtggatggaaaacttttaggagtctaaaagtcgaagg |
21322075 |
T |
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| Q |
101 |
aaattttagagggatnnnnnnnnttataatataaaggaatcaaaaacattttta |
154 |
Q |
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| T |
21322074 |
aaattttagagggataaaaaaaattataatataaaggaatcaaaaacattttta |
21322021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 21321704 - 21321598
Alignment:
| Q |
286 |
attacccccacttaggtcacaggcttgcgttaccaaagcccggtgtttttcatattctcactagccacatataaacagtgacaaactctttgattaaacg |
385 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
21321704 |
attacccccacttgggtcacaggcttgcgttaccaaagcccggtgtttttcatattctcactagccacatataaacagcgacaaactctttaattaaacg |
21321605 |
T |
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| Q |
386 |
atgtggg |
392 |
Q |
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||||||| |
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| T |
21321604 |
atgtggg |
21321598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 21321920 - 21321822
Alignment:
| Q |
173 |
gacctaccggttaatacacccttaagatcggagatttgaacaatctctacaatctcaaggtactctcatggagagacctgctctattaagccatcgata |
271 |
Q |
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| T |
21321920 |
gacctaccggttaatacacccttaagatcggagatttgaacaatctctacaatctcaaggtactctcatggagagacctgctctgttaagccagcgata |
21321822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 21321751 - 21321705
Alignment:
| Q |
265 |
atcgataatttccatcatttaattacccccacttaggtcacaggctt |
311 |
Q |
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| T |
21321751 |
atcgataatttccatcattttattacccccacttgggtcacaagctt |
21321705 |
T |
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