View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_1 (Length: 742)
Name: NF11536_low_1
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 8897393 - 8896939
Alignment:
| Q |
19 |
atctgtagttactgctggtaattgttttcagtatgctggctcaattaaaatggaaaatatgaccactgcagtcatggctcagtatgaacaacttggactc |
118 |
Q |
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| T |
8897393 |
atctgtagttactgctggtaattgttttcagtatgctggctcaattaaaatggaaaatatgaccactgcagtcatggctcagtatgaacaacttggactc |
8897294 |
T |
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| Q |
119 |
tcagctgataatgttttccatcacatgttgactcctaaatcaaattgccaaaaagagagctctccctttccatcaagttcctcctcccagtccaatcctg |
218 |
Q |
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| T |
8897293 |
tcagctgataatgttttccatcacatgttgactcctaaatcaaattgccaaaaagagagctctccctttccatcaagttcctcctcccagtccaatcctg |
8897194 |
T |
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| Q |
219 |
aaagtcacaattcagaacatcatcataattgctgttatgacgctaactacagttttcacaaccaaaaccttgctnnnnnnnctgatttggatcatgcagt |
318 |
Q |
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| T |
8897193 |
aaagtcacaattcagaacatgatcataattgctgttatgacgctaactacagttttcacaaccaaaaccttactgaaaaaactgatttggatcatgcagt |
8897094 |
T |
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| Q |
319 |
gcatgattctcctagtgctggtcagggttttggcaatgacttttgtcatgcttcaaatcatattaatagttgtggcaatgttggagaggttatttcaaat |
418 |
Q |
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| T |
8897093 |
gcatgattctcctagtgctggtcagggttttggcaatgacttttgtcatgcttcaaatcatattaatagtcgtggcaatgttggagaggctatttcaaat |
8896994 |
T |
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| Q |
419 |
gcggttactaagaattcaagaacttctagtgatggtaggcgctatagtcatagta |
473 |
Q |
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| T |
8896993 |
gcggttactaagaattcaagaacttctagtgatggtaggcgctataatcatagta |
8896939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 525 - 730
Target Start/End: Complemental strand, 8896887 - 8896682
Alignment:
| Q |
525 |
ctcatcgctccagtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtactacgactagtggtatagct |
624 |
Q |
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| T |
8896887 |
ctcatcgctctcgtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtactatgactagtggtatagct |
8896788 |
T |
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| Q |
625 |
tctttagaaatttgctgtagatgtgtatccttgattcgattagtttgggaactcctatatcatgtctgactacagatctcaatgctctgatttgttgcac |
724 |
Q |
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| T |
8896787 |
tctttagaaatttgctgtagatgtgtatctatgattcaattagtttggaaactcctatatcatgtctgactacagatctcaatgctctgatttgttgcac |
8896688 |
T |
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| Q |
725 |
aggttc |
730 |
Q |
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|||||| |
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| T |
8896687 |
aggttc |
8896682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 49085267 - 49085348
Alignment:
| Q |
525 |
ctcatcgctccagtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtact |
606 |
Q |
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| T |
49085267 |
ctcatcgcactagccaaagagaagcagctctaacaaagtttcgactgaagcgaaaagacagatgctatgacaaaaaggtact |
49085348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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