View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_10 (Length: 310)
Name: NF11536_low_10
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34986247 - 34985951
Alignment:
| Q |
1 |
tggtttgcttcttctcttaatgttttctctttgaacaagcggattgtcaatgaaccggagcatgtgactaaatcagtcctataataggaacaagagatgc |
100 |
Q |
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| T |
34986247 |
tggtttgcttcttctcttaatgttttctctttgaacaagtggattgtcaatgaaccggagcatgtgactaaatcagtcctataataggaacaagagatgc |
34986148 |
T |
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| Q |
101 |
tttgaaggatatgatattcctgatgcggctgatatggtgttctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986147 |
tttgaaggatatgatattcctggtgcggctgatatggtgttctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagc |
34986048 |
T |
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| Q |
201 |
caaattgtaggcattccagtt-----cctaacttctaatgtgcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcc |
292 |
Q |
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| T |
34986047 |
caaattgtaggcattccagttcctatcctaacttctaatgtgcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcc |
34985951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34993065 - 34992775
Alignment:
| Q |
1 |
tggtttgcttcttctcttaatgttttctctttgaacaagcggattgtcaatgaaccggagcatgtgactaaatcagtcctataataggaacaagagatgc |
100 |
Q |
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|||| |||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34993065 |
tggtctgcttcttctcttaatgtttgctcattgaacaagtg-attgtcaatgaaccggagcatgtgactaaatcagtcctataataggaacaagagatgc |
34992967 |
T |
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| Q |
101 |
tttgaaggatatgatattcctgatgcggctgatatggtgttctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagc |
200 |
Q |
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| T |
34992966 |
tttgaaggatatgatattcctggtgcggctgatatggtgttctgagcacataattccattgcaaactgaaggcaatttaagtgctctgattctgcagagc |
34992867 |
T |
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| Q |
201 |
caaattgtaggcattccagttcctaacttctaatgtgcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992866 |
caaattgtaggcattccagttcctaacttctaatgtgcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcc |
34992775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 34978373 - 34978240
Alignment:
| Q |
124 |
tgcggctgatatggtgttctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccagttcc |
223 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34978373 |
tgcggctgatatggtgttctgagcgcataattccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccagttcc |
34978274 |
T |
|
| Q |
224 |
taacttctaatgtgcgttcgactccaccatcacca |
258 |
Q |
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||| ||||||||||| | |||||||| |||||| |
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| T |
34978273 |
caac-tctaatgtgcgctgaactccaccgtcacca |
34978240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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