View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_14 (Length: 263)
Name: NF11536_low_14
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34986235 - 34986481
Alignment:
| Q |
1 |
aagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtacatgacacaccatataagctgaacatgacgt |
100 |
Q |
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| T |
34986235 |
aagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtacatgacacgccatataagctgaacatgacgt |
34986334 |
T |
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| Q |
101 |
gatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986335 |
gatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
34986434 |
T |
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| Q |
201 |
tctatgatcctagctctttagcttccactttgtagtatttctctgct |
247 |
Q |
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| T |
34986435 |
tctatgatcctagctctttagcttccactttgtagtatttctctgct |
34986481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34993053 - 34993289
Alignment:
| Q |
1 |
aagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaagcctaatcaatcgtacatgacacaccatataagctgaacatgacgt |
100 |
Q |
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|||||||| |||||||||||| | ||| ||||||||||||||||| ||||| || ||||||||| ||||| || || ||| ||||| ||||||| |||| |
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| T |
34993053 |
aagaagcagaccacacccttctcgtccggttacaatccataaaattaaccgggagtctaatcaattgtacaagatacgccacataaggtgaacataacgt |
34993152 |
T |
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| Q |
101 |
gatattggtcttgagattccaaagtttggatcatatattctatttaataactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
200 |
Q |
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|| || |||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34993153 |
gagat-ggtcttgagattccaaagtttggaccatatgttctatttaata-ctatgagttgcacatagtttttgtccttgtaaaatcagcatgagttttaa |
34993250 |
T |
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| Q |
201 |
tctatgatcctagctctttagcttccactttgtagtatt |
239 |
Q |
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| T |
34993251 |
tctatggtcctagctctttagcatccactttgtagtatt |
34993289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 34986511 - 34986563
Alignment:
| Q |
148 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
200 |
Q |
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| T |
34986511 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
34986563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 19326104 - 19326167
Alignment:
| Q |
170 |
tttgtccttgtaaaa-tcagcatgagttttaatctatgatcctagctctttagcttccactttg |
232 |
Q |
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||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
19326104 |
tttgtccttgtaaaaatcaccatgagttttaatctatagtcctagctctttagcttcctctttg |
19326167 |
T |
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