View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_3 (Length: 584)
Name: NF11536_low_3
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 46960011 - 46959446
Alignment:
| Q |
1 |
gaagattgaaaatgtaaatgtatat--ggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttggtaaccttagcatt |
98 |
Q |
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| T |
46960011 |
gaagattgaaaatgtaaatgtatatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttggtaaccttagcatt |
46959912 |
T |
|
| Q |
99 |
ttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacatttca |
198 |
Q |
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| T |
46959911 |
ttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacatttca |
46959812 |
T |
|
| Q |
199 |
ggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaattttaagata |
298 |
Q |
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| T |
46959811 |
ggatatcgtgatggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgacttccatgcaagaatcaggtattgaattttaagata |
46959712 |
T |
|
| Q |
299 |
tttttgcagggtcgttttgtaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaatatagttttgaat |
398 |
Q |
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| T |
46959711 |
tttttgcagggtcattttgcaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaatatagttttgaat |
46959612 |
T |
|
| Q |
399 |
tgtctttatgatttgtagaatataatagctgatttcataattttcatcgattataatcatgtatgtcagtgacatacattcttgtcaatctcctacaagg |
498 |
Q |
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| T |
46959611 |
tgtctttatgatttgtagaatataatagctgatttcataattttcatcaattataatc----atgtcagtgacatacattcttgtcaatctcctacaagg |
46959516 |
T |
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| Q |
499 |
attcaaattaatgaactttcataatgattttaattcaactgaagannnnnnnctgtaagaatgtaataat |
568 |
Q |
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| T |
46959515 |
attcaaattaatgaactttcataatgattttaattcaactgatgatttttttctgtaagaatgtaataat |
46959446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 44522143 - 44522455
Alignment:
| Q |
1 |
gaagattgaaaatgtaaatgtatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttg----gtaaccttagca |
96 |
Q |
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| T |
44522143 |
gaagattcaaaatgtaattgttgatggagcttatctttacaacactgataatggggtgagaatcaaaacatggcaggtaactttcttcgtaaccgtatca |
44522242 |
T |
|
| Q |
97 |
ttttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatcacattt |
196 |
Q |
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| T |
44522243 |
ttttcattctcattctatttcacctagtgatga-caagtctattgagtcgagccaaattttctttagggtgggagtggttttgcctccaagatcacattc |
44522341 |
T |
|
| Q |
197 |
caggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaattttaaga |
296 |
Q |
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| T |
44522342 |
cagaatatcttaatggaaaatgtgtccaatccaataataatagatcaatactactgcgattcacgacatccatgcaagaatcaggtattgaattttaaga |
44522441 |
T |
|
| Q |
297 |
tatttttgcagggt |
310 |
Q |
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| T |
44522442 |
tatttttgcagggt |
44522455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 44522569 - 44522651
Alignment:
| Q |
461 |
atgtcagtgacatacattcttgtc-aatctcctacaaggattcaaattaatgaactttcataatgattttaattcaactgaaga |
543 |
Q |
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| T |
44522569 |
atgtcagtgacatacattcctgtcgaatctccaacaaggattcaaattaatgaagtttcatgat-aatttaattcaactgaaga |
44522651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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