View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_4 (Length: 583)
Name: NF11536_low_4
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 181 - 567
Target Start/End: Original strand, 31330005 - 31330392
Alignment:
| Q |
181 |
gctgctttgtgtaatgagttttcagttcttgaacatctaactatgcaattaatgttggatctaatttaattttatacaatgtgaaagtgaggcaataaag |
280 |
Q |
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| T |
31330005 |
gctgctttgtgtaatgagttttcagttcttgaacatctaactatgcaattaatgttggatctaatttaattttatacaatgtgaaagtgaggcaataaag |
31330104 |
T |
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| Q |
281 |
ttgtttagttaagacacag-tgactaattatttcttgtatgattcctacatttttagatccgtgtttggcattgttattcggttaaatgttgtttatcgt |
379 |
Q |
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| T |
31330105 |
ttgtttagttaagacacaaatgactaattatttcttgtatgattcctacatttttagatccgtgtttggcattgttatttggttaaatgttgtttatcgt |
31330204 |
T |
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| Q |
380 |
tcaaatgccacgatgtaaatggatggaatcttcatggtgtattgccttattatagattgtaactctgcctttatcagcagaggtgcgacttttgttttgt |
479 |
Q |
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| T |
31330205 |
tcaaatgccacgatgtaaatggatggaatcttcatggtgtattgccttattatagattgtaactctgcctttatcagtagaggtgcgacttttgttttgt |
31330304 |
T |
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| Q |
480 |
cccatggaagatttaaatttcagattctttttagacgcctagctgctaaagccttcgtgtgcagctagagcttacattattagcatat |
567 |
Q |
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| T |
31330305 |
cccatggaagatttaaatttcagattctttttagacgcctagctgctaaagccttcgtgtgcagctagaacttacattattagcatat |
31330392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 31329825 - 31329978
Alignment:
| Q |
1 |
atgttataaatctgatttgtttcattttgcagtgattttgattcgactatgctggcttgcattgcattttcatgccccaatctggagtctatggagatct |
100 |
Q |
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| T |
31329825 |
atgttataaatctgatttgtttcattttgcagtgattttgattcgactatgctggcttgcattgcattttcatgccccaatctggagtctatggagatct |
31329924 |
T |
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| Q |
101 |
ctgtctttgacaccgcaaccaatcggatcaatgggtattactcatgctcctctc |
154 |
Q |
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| T |
31329925 |
ctgtctttgacaccgcaaccaatcggatcaatgggtattactcatgctcctctc |
31329978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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