View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11536_low_8 (Length: 417)
Name: NF11536_low_8
Description: NF11536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11536_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 47382663 - 47383049
Alignment:
| Q |
20 |
gtgaatgccaccaaagaacttatatccatggacacattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgc |
119 |
Q |
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| T |
47382663 |
gtgaatgccaccaaagaacttatatccatggacacattaaggcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgc |
47382762 |
T |
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| Q |
120 |
ctagtaggactcactattgtgtatatatccttgaaatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttccc |
219 |
Q |
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| T |
47382763 |
ctagtaggactcactattgtgtatatatccttgaaatttcaaaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttccc |
47382862 |
T |
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| Q |
220 |
aaaacacaatcatgatgcatggatcagacagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgattttcccccca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47382863 |
aaaacacaatcatgatgcatggatcagacagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgatttttccccca |
47382962 |
T |
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| Q |
320 |
taacattttcttcaccatttgtatataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
406 |
Q |
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| T |
47382963 |
taacattttcttcaccatttgtatataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcat |
47383049 |
T |
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