View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_high_11 (Length: 553)
Name: NF11537_high_11
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 187 - 454
Target Start/End: Complemental strand, 4034006 - 4033739
Alignment:
| Q |
187 |
aacaaatgtcaatcacattaactctaaggatgtatggctccgccatttgtaatcgtctcaaatcataaacttgcaaatgcgtttaaggattagaatatct |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4034006 |
aacaaatgtcaatcacattaactctaaggatgtatggctccgccatttgtaatcgtctcaaatcataaacttgcaaatgcgtttaaggattagaatatct |
4033907 |
T |
|
| Q |
287 |
tcaaaattttgaaagccagcctcaatataggtgataaaaattcgcttgggttggtctgatactattgacttaaaattttggagtgtgcttctctttaagg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
4033906 |
tcaaaattttgaaagccagcctcaatataggtgataaaaactcgcttgggttggtttgatactattgacttgaaactttggagtgtgcttctctttaagg |
4033807 |
T |
|
| Q |
387 |
tcttaagtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaatataggag |
454 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4033806 |
tcttaagtttgactctctcatatgtcaatttggttgaactaatttaacttcttaaaaaaatataggag |
4033739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 4034244 - 4034074
Alignment:
| Q |
16 |
agttttatccatgaatacatgcgtcacatgtatatattttgtttcatccctagtcatgtcatagatgattgaggcaagtgaaaaacacaatgtgattctt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4034244 |
agttttatccatgcatacatgcgtcacatgtatatattttgtttcatccctagtcatgtcatagatgattgaggcaagtgagaaacacaatgtgattctt |
4034145 |
T |
|
| Q |
116 |
attgtgttttgaattctttaacttacaagaaact-tctttttcaatggcaatgacttttcaaacacttaga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4034144 |
attgtgttttgaattctttaacttacaagaaactctctttttcaatggcaatgacttttcaaacacttaga |
4034074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 447
Target Start/End: Complemental strand, 40286894 - 40286811
Alignment:
| Q |
364 |
ttggagtgtgcttctctttaaggtcttaagtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaat |
447 |
Q |
| |
|
|||||||||| | ||| | ||| ||||| |||| | |||||| |||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
40286894 |
ttggagtgtggtcctcctcaagatcttatgtttcattctctccaatgttaatttggatggactaatttagcttcttaaaaaaat |
40286811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 3260186 - 3260152
Alignment:
| Q |
413 |
aatttggttgaactaatttaacttcttaaaaaaat |
447 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
3260186 |
aatttgattgaactaatttaacttcttaaaaaaat |
3260152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 36714266 - 36714230
Alignment:
| Q |
408 |
atgttaatttggttgaactaatttaacttcttaaaaa |
444 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36714266 |
atgttaatttggctgaactagtttaacttcttaaaaa |
36714230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 20286955 - 20286996
Alignment:
| Q |
407 |
tatgttaatttggttgaactaatttaacttcttaaaaaaata |
448 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
20286955 |
tatgttaatttggatgagttaatttaacttcttaaaaaaata |
20286996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 35345818 - 35345871
Alignment:
| Q |
393 |
gtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaa |
446 |
Q |
| |
|
||||||||||||| |||| ||||||| || ||||||||| ||||||||||||| |
|
|
| T |
35345818 |
gtttgactctctccgatgtcaatttggatggactaatttatcttcttaaaaaaa |
35345871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 53496965 - 53496997
Alignment:
| Q |
413 |
aatttggttgaactaatttaacttcttaaaaaa |
445 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
53496965 |
aatttggttggactaatttaacttcttaaaaaa |
53496997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University