View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_2 (Length: 889)
Name: NF11537_high_2
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_2 |
 | |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 808; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 19 - 880
Target Start/End: Original strand, 160889 - 161752
Alignment:
| Q |
19 |
caaggtcccaaacatttcactgatctgataaggnnnnnnnaccttccagctgatttaggaaagagtggttgttctcatattttcccaagaacagtaacaa |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
160889 |
caaggtcccaaacatttcactgatctgataaggtttttttaccttccagctgatttaggaaagagtgattgttctcatattttcccaagaacagtaacaa |
160988 |
T |
|
| Q |
119 |
agttaatggattctggtgtgagttttgagaaagttgtggggagaagattactagacataacatttgagaagaaaccatttctaagtaattttctctgctt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
160989 |
agttaatggattctggtgtgagttttgagaaagttgtggggagaagattactagacataacatttgagaagaaaccatttctaagtaattttctctgctt |
161088 |
T |
|
| Q |
219 |
aggttgtttaccttcattttcatgtttgaatcatttcaaagcgcgtcttaggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaac |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161089 |
aggttgtttaccttcatttttatgtttgaatcatttcaaagcgcgtcttaggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaac |
161188 |
T |
|
| Q |
319 |
ctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgcaattatgtttcacttgttgattctcttatacatacacaggttgatgttgatt |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
161189 |
ctcattgccctagaacaatgtcattatcaagaacaaccttatatatgcaattatgtttcacttgttgattctcttatacatacacatgttgatgttgatt |
161288 |
T |
|
| Q |
419 |
tgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaatgcttgttaatggtctttgtaaacatgttgtggtgaattcaac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
161289 |
tgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaatgcttgttaatggtctttgtaaacatgttgtggtgaattcaac |
161388 |
T |
|
| Q |
519 |
ttgttactatgagattattaatgagcttaataagcattaccagaatatttggaaccgtaccatggctgcattatggttggtgtattttagagatgcttgg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
161389 |
ttgttactatgagattattaatgagcttaataagcattatcagaatatttggaaccgtaccatggctgcattatggttggtgtattttagagatgcttgg |
161488 |
T |
|
| Q |
619 |
agagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaa |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161489 |
agagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaa |
161588 |
T |
|
| Q |
719 |
tgtataattcgtggtttggattattatcataactagattga--tgagtgttatgtgtatttatttattttggtctaagtatagttgttaagattcaccct |
816 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161589 |
tgtataattcgtggtttggattattatcataactagattgatgtgtgtgttatgtgtatttatttattttggtctaagtatagttgttaagattcaccct |
161688 |
T |
|
| Q |
817 |
taaagtgaataagtgggtaatttagagttcgaaatcccactggtatatactatagtgtctctgc |
880 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
161689 |
taaagtgaataagtgggtaatttagagttcgaaatcccactggtatatactatagtgtctctgc |
161752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 68 - 766
Target Start/End: Original strand, 152461 - 153159
Alignment:
| Q |
68 |
ctgatttaggaaagagtggttgttctcatattttcccaagaacagtaacaaagttaatggattctggtgtgagttttgagaaagttgtggggagaagatt |
167 |
Q |
| |
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||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
152461 |
ctgatttagaaaagagtggtagttctcatacttttccaagaacagtaacaaagttaatagattctggtgtgagttttgagaaattcccggggagaagatt |
152560 |
T |
|
| Q |
168 |
actagacataacatttgagaagaaaccatttctaagtaattttctctgcttaggttgtttaccttcattttcatgtttgaatcatttcaaagcgcgtctt |
267 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
152561 |
actagacataaaatttgagaagaaacagtttctaagttattttctctgcttaggttgtttaccttctttttcatgtttgaacaatttcaaagcacgtcta |
152660 |
T |
|
| Q |
268 |
aggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaacctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgca |
367 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
152661 |
atgattccgcaattgaaggttgatcacacaacagaatgcgttctaaggaacctcattgccctagaacaatgtcagtatcaagaacaaccttatatatgca |
152760 |
T |
|
| Q |
368 |
attatgtttcacttgttgattctcttatacatacacaggttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaaga |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
152761 |
attatgtttcacttgttgattctcttatacatacacaagttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgacaaaga |
152860 |
T |
|
| Q |
468 |
agttgcaatgcttgttaatggtctttgtaaacatgttgtggtgaattcaacttgttactatgagattattaatgagcttaataagcattaccagaatatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||| ||||| ||||||||| |
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| T |
152861 |
agttgcaatgcttgttaatggtctttgcaaacatgttgttgtgaattcaacttgttactatgatactattaataagcttaataaccattatcagaatatt |
152960 |
T |
|
| Q |
568 |
tggaaccgtaccatggctgcattatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcat |
667 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152961 |
tggaaccgtaccatgactacattatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcat |
153060 |
T |
|
| Q |
668 |
tcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaatgtataattcgtggtttggattattatcataactagattgatgagtgt |
766 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||| |
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|
| T |
153061 |
tcaactttgtacgtcttgccaagattcttttctactagacaaacttgaaaatgtataattcatggtttgaattattatcataactagatttatgtgtgt |
153159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 106597 - 106515
Alignment:
| Q |
295 |
acaacagaatgtgttttaaggaacctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgcaattatgtttc |
377 |
Q |
| |
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||||| ||||||||| | |||||||||||||| | ||||||||||| ||| | | ||||||| ||||||||||||||||| |
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| T |
106597 |
acaactgaatgtgttcttaggaacctcattgctttggaacaatgtcattattcaaaccaacctttcatatgcaattatgtttc |
106515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 425
Target Start/End: Original strand, 143245 - 143374
Alignment:
| Q |
296 |
caacagaatgtgttttaaggaacctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgcaattatgtttcacttgttgattctcttat |
395 |
Q |
| |
|
|||||||||||||| | |||||||| || || | ||||||||||| ||| ||| ||||||| |||||||| |||||||| | |||||||| | || |
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|
| T |
143245 |
caacagaatgtgttcttaggaacctaatcgcatttgaacaatgtcactattcagagcaacctttcatatgcaactatgtttctttaattgattctttgat |
143344 |
T |
|
| Q |
396 |
acatacacaggttgatgttgatttgttggt |
425 |
Q |
| |
|
|||||||| | |||||||| |||||||| |
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| T |
143345 |
tcatacacacgaagatgttgagttgttggt |
143374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 516
Target Start/End: Complemental strand, 9743 - 9504
Alignment:
| Q |
277 |
caattgaaggttgatcacacaacagaatgtgttttaaggaacctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgcaattatgttt |
376 |
Q |
| |
|
|||||||| || || || ||||| ||||||||| | ||||||||||| || | || |||||||| |||| ||| | || ||||| || || ||||||| |
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|
| T |
9743 |
caattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtcactatccagacgagccctatatttgtaactatgttt |
9644 |
T |
|
| Q |
377 |
cacttgttgattctcttatacatacacaggttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaat |
476 |
Q |
| |
|
| || ||||||||||||| || || | | ||||| || |||||||||||||| |||||||||||||| ||| | |||||||| | ||| | || | |
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|
| T |
9643 |
cttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaa |
9544 |
T |
|
| Q |
477 |
gcttgttaatggtctttgtaaacatgttgtggtgaattca |
516 |
Q |
| |
|
|||||||| ||||| || |||||| ||||| |||||||| |
|
|
| T |
9543 |
tcttgttaacggtctatgcaaacatattgtgatgaattca |
9504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 516
Target Start/End: Complemental strand, 23197 - 22958
Alignment:
| Q |
277 |
caattgaaggttgatcacacaacagaatgtgttttaaggaacctcattgccctagaacaatgtcaatatcaagaacaaccttatatatgcaattatgttt |
376 |
Q |
| |
|
|||||||| || || || ||||| ||||||||| | ||||||||||| || | || |||||||| |||| ||| | || ||||| || || ||||||| |
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|
| T |
23197 |
caattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtcactatccagacgagccctatatttgtaactatgttt |
23098 |
T |
|
| Q |
377 |
cacttgttgattctcttatacatacacaggttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgataaagaagttgcaat |
476 |
Q |
| |
|
| || ||||||||||||| || || | | ||||| || |||||||||||||| |||||||||||||| ||| | |||||||| | ||| | || | |
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|
| T |
23097 |
cttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaa |
22998 |
T |
|
| Q |
477 |
gcttgttaatggtctttgtaaacatgttgtggtgaattca |
516 |
Q |
| |
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|||||||| ||||| || |||||| ||||| |||||||| |
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| T |
22997 |
tcttgttaacggtctatgcaaacatattgtgatgaattca |
22958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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