View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_high_20 (Length: 443)
Name: NF11537_high_20
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 36000735 - 36001148
Alignment:
| Q |
19 |
actaaacatattagctgtgataattagagtaatgattgtcaaaagattgagggaataaacttttttctctttgatagagtaacaacgacatcaaattatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36000735 |
actaaacatattagctgtgataattagagtaatgattgtcaaaagattgagggaataaacttttttctctttgatagagtaacaacgacatcaagttatt |
36000834 |
T |
|
| Q |
119 |
tgcacttacactcttcttctttctctttctagtactattgtattctttgactttgtactaaggatatccactgtattatgtcattccttgatcaatataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36000835 |
tgcacttacactcttcttctttctctttctagtactattgtattctttgactttgtactaaggatatccactgtattatgtcattccttgatcaatataa |
36000934 |
T |
|
| Q |
219 |
ttatctggttccattgttacttacctggaaaaatagtgatacttttacaatggtgctttcattggtgagcttatcacctatggatgcatcattaagttaa |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36000935 |
ttatccggttccattgttacttacctggaaaaatagtgatacttttacaatggtgctttcattggtgagcttatcacctatggatgcatcattaagttaa |
36001034 |
T |
|
| Q |
319 |
attggtcagaggaaccgtttcatgaaaccacttggttatgcacaagaatcaccaacatgtatagacagaagaaatcgaagcatcggaaccatagtcacac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36001035 |
attggtcagaggaaccgtttcatgaaaccacttggttatgcacaagaatcaccaacatgtatagacagaagaaatcgaagcatcggaaccatagtcacac |
36001134 |
T |
|
| Q |
419 |
ggtttgcaattcat |
432 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36001135 |
ggtttgcaattcat |
36001148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University