View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_22 (Length: 430)
Name: NF11537_high_22
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 100 - 415
Target Start/End: Original strand, 13397532 - 13397849
Alignment:
| Q |
100 |
gcttgttcccacgtatgatcggagatcaaagactttatttt--ttcatggaaagcttccacttacttgcacatgtggtcatatgcttcgttatatgtagt |
197 |
Q |
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| T |
13397532 |
gcttgttcccacgtatgatcagagatcaaagactttattttttttcatggaaagcttccacttacttgcacatgtggtcatatgtttcgttatatgtagt |
13397631 |
T |
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| Q |
198 |
ttgctccttggttcaattaaatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgtaagaca |
297 |
Q |
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| T |
13397632 |
ttgctccttggttcaattaaatagttctgatgatgttcacttgttgaattaattagattatgtttttgtttagttgtaacttggttaccattgtaagaca |
13397731 |
T |
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| Q |
298 |
ttcgtagatcgttgtagaaacaagtttagttgtcatctcttttcagaatctcatatctcaagttttgattcgattcaaaattggtatacattctttgaat |
397 |
Q |
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| T |
13397732 |
ttcgtagatcattgtagcaacaagtttggttgtcatctcttttcagaatctcatatctcaagttttgattctattcaaaattggtatacattctttgaat |
13397831 |
T |
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| Q |
398 |
cgaagcacttttctatcc |
415 |
Q |
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||||||| |||||||||| |
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| T |
13397832 |
cgaagcatttttctatcc |
13397849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 13397480 - 13397532
Alignment:
| Q |
17 |
agaatccttgaccactattcgggatttgtatctcttagagacatcatatgttg |
69 |
Q |
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| T |
13397480 |
agaatccttgaccaccattcgggatttgtatctcttagagacatcatatgttg |
13397532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 6691906 - 6691804
Alignment:
| Q |
65 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt----tttcatggaaagcttccactt |
160 |
Q |
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| T |
6691906 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtctgattggagatcaaagacttcatttcctctttcatggcaagctcccactt |
6691807 |
T |
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| Q |
161 |
act |
163 |
Q |
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||| |
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| T |
6691806 |
act |
6691804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 796915 - 796989
Alignment:
| Q |
65 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
139 |
Q |
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| T |
796915 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
796989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 8272912 - 8272838
Alignment:
| Q |
65 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
139 |
Q |
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| T |
8272912 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
8272838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 19943856 - 19943782
Alignment:
| Q |
65 |
tgttgtgaagttccttctttcctatgagtaacttagcttgttcccacgtatgatcggagatcaaagactttattt |
139 |
Q |
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| T |
19943856 |
tgttgtgaagtgccttctttcctatgggtaacttagctagctcccatgtttgattggagatcaaagacttcattt |
19943782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 16117329 - 16117433
Alignment:
| Q |
191 |
atgtagtttgctccttggttcaattaaata-gttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccatt |
289 |
Q |
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|||||||||| || |||||||||||| ||| |||||| |||| || ||| ||||| || || |||| |||||||||||| | | | |||||||||| ||| |
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| T |
16117329 |
atgtagtttgttcattggttcaattagataagttttgttgatatttattccttgacttgataagataatgtttttgtttggctatcgcttagttactatt |
16117428 |
T |
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| Q |
290 |
gtaag |
294 |
Q |
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| T |
16117429 |
gtaag |
16117433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 15784274 - 15784200
Alignment:
| Q |
217 |
aatagttttgatgatgttcatttcttgaattaattagattatgtttttgtttagttgtagcttagttaccattgt |
291 |
Q |
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| T |
15784274 |
aatagttttgatgatgttttctccttgatttgtttagataatgtttttgtttaattgcaacttagttaccattgt |
15784200 |
T |
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