View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_28 (Length: 408)
Name: NF11537_high_28
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 356
Target Start/End: Original strand, 41968476 - 41968709
Alignment:
| Q |
123 |
gtaagaattactcttgttcaaaatataacactaagctgtgctccatattactccaaataatactaatttattaacatgattcaattaaattgtaattaag |
222 |
Q |
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| T |
41968476 |
gtaagaattactcttgttcaaaatataagactaagctgtgctccatattactccaaataatactaatttattaacatgattcaattaaattgtaattaag |
41968575 |
T |
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| Q |
223 |
aaattaatttgaaggatttcgtttgttcccccaagtagaaatctgttgaccaaatgcttggattctgttccagtcaaaagaccactagctagctatagtt |
322 |
Q |
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| T |
41968576 |
aaattaatttgaaggatttcgtttgttcccccaagtagaaatctgttgaccaaatacttggattctgttccagtcaaaagaccactagctagctatagtt |
41968675 |
T |
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| Q |
323 |
ggaaaaaattactgtttcaattaaaaataactat |
356 |
Q |
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| T |
41968676 |
ggaaaaaattactgtttcaattaaaaataactat |
41968709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 41968370 - 41968440
Alignment:
| Q |
17 |
aaagatgcatgtgtacggacatgaaattttatattgaaaaattcaacatagtaaatattaaacgttctctc |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41968370 |
aaagatgcatgtgtacggacatgaaattttatattgaaaaattcaacatagtaaatattaaatgttctctc |
41968440 |
T |
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