View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_high_3 (Length: 837)

Name: NF11537_high_3
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_high_3
NF11537_high_3
[»] chr4 (6 HSPs)
chr4 (1-589)||(54572740-54573316)
chr4 (643-821)||(54573519-54573697)
chr4 (464-576)||(33895781-33895893)
chr4 (598-640)||(54573452-54573494)
chr4 (349-447)||(40346019-40346117)
chr4 (349-447)||(50771575-50771673)
[»] chr6 (11 HSPs)
chr6 (349-462)||(8753137-8753250)
chr6 (152-313)||(353019-353193)
chr6 (350-447)||(32737281-32737378)
chr6 (454-586)||(8752973-8753097)
chr6 (137-209)||(14802777-14802849)
chr6 (137-215)||(31984797-31984873)
chr6 (136-217)||(12273588-12273669)
chr6 (236-302)||(14802893-14802959)
chr6 (136-191)||(807670-807725)
chr6 (349-447)||(7093692-7093790)
chr6 (152-190)||(31405733-31405771)
[»] chr7 (17 HSPs)
chr7 (454-588)||(15674193-15674325)
chr7 (349-452)||(19294489-19294592)
chr7 (349-452)||(41767979-41768082)
chr7 (454-588)||(41767796-41767929)
chr7 (97-226)||(38787029-38787158)
chr7 (454-588)||(5899777-5899911)
chr7 (349-449)||(5899964-5900063)
chr7 (454-588)||(19294642-19294777)
chr7 (349-447)||(19323994-19324092)
chr7 (534-588)||(10611837-10611891)
chr7 (349-447)||(18299681-18299779)
chr7 (349-447)||(32575239-32575337)
chr7 (152-215)||(4648282-4648345)
chr7 (349-394)||(38142009-38142054)
chr7 (260-302)||(30966665-30966707)
chr7 (349-394)||(15669461-15669506)
chr7 (349-394)||(29626683-29626728)
[»] chr8 (5 HSPs)
chr8 (454-588)||(33574147-33574280)
chr8 (349-462)||(33574320-33574433)
chr8 (454-588)||(45103774-45103907)
chr8 (136-226)||(24542657-24542747)
chr8 (140-226)||(15051516-15051602)
[»] chr1 (6 HSPs)
chr1 (87-313)||(47833759-47833996)
chr1 (123-224)||(2079112-2079213)
chr1 (349-447)||(16541111-16541209)
chr1 (349-447)||(15759727-15759825)
chr1 (136-218)||(25588693-25588774)
chr1 (537-588)||(16540924-16540975)
[»] chr2 (4 HSPs)
chr2 (96-313)||(36338882-36339113)
chr2 (96-313)||(27648308-27648538)
chr2 (137-302)||(44686118-44686295)
chr2 (227-288)||(26690565-26690624)
[»] chr3 (9 HSPs)
chr3 (140-302)||(24734249-24734423)
chr3 (359-462)||(20692299-20692402)
chr3 (140-307)||(53837482-53837662)
chr3 (136-313)||(53833878-53834068)
chr3 (464-583)||(20692130-20692249)
chr3 (136-226)||(16196750-16196840)
chr3 (154-217)||(3083783-3083846)
chr3 (349-447)||(53459143-53459241)
chr3 (155-218)||(7910318-7910381)
[»] chr5 (5 HSPs)
chr5 (141-313)||(33827499-33827684)
chr5 (124-215)||(33544976-33545068)
chr5 (349-447)||(40973507-40973605)
chr5 (141-215)||(17895633-17895707)
chr5 (349-447)||(25982414-25982512)
[»] scaffold0432 (1 HSPs)
scaffold0432 (349-447)||(8870-8968)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 54572740 - 54573316
Alignment:
Q  1 ttgagagaatacgtatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtctctaataacaaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54572740 ttgagagaatacgtatgtgacaaaaggctggctacttcaatctctcttgttttctcactttcatttcttcttttcaattttggtctctaataacaaata- 54572838  T
Q  101 caaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagg 198  Q
          |||| ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  54572839 ------tatactaagttcccatgagcatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgacttttgtatcttggagg 54572932  T
Q  199 gtattagctatgagacctactgcatcggggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctc 298  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54572933 gtattagctatgagacctactgcatcgagatggtgaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagtttacttattctc 54573032  T
Q  299 tattctattgtatttgtagaccgtaaaataacttctatgaagaaaaatgcttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaacc 398  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  54573033 tattctattgtatttgtagaccgtaaagtaacttatgtgaagaaaaatgcttcttgtgtttcggtgatttggatcgaaagaaacgttcgggtctttaacc 54573132  T
Q  399 aaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatctttctcgtggttgaacccattaccttgtttgggcatccatttgtaataggg 498  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||      | ||||||||||||||||||||||||||||||| ||||||||||    
T  54573133 aaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct------tagttgaacccattaccttgtttgggcatccatctgtaataggg 54573226  T
Q  499 gtcttgacacttggccacttttattttatatcttatgattattctgatgtaacttgatactctttcagctgattttttggcacttcttgta 589  Q
    |||| | ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  54573227 gtctcggcacttggccacttttgttttgtatcctatgattattctgatgtaacttgatactctttcaactga-tttttggcacttcttgta 54573316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 643 - 821
Target Start/End: Original strand, 54573519 - 54573697
Alignment:
Q  643 taattctatgtataaattttcctacactcttctccacccacaagctttacgaggttcaaactctagagtccatggtgacaagtttattgtgtacacgttc 742  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54573519 taattctatgtctaaattttcctacactcttctccacccacaagttttacgaggttcaaactctagagtccatggtgacaagtttattgtgtacacgttc 54573618  T
Q  743 gaaaaattactactgacagcacattaaaaataatatacatctgctcttctcccaaggccagagaaccatctcaattttt 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54573619 gaaaaattactactgacagcacattaaaaataatatacatctgctcttctcccaaggccagagaaccatttcaattttt 54573697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 576
Target Start/End: Original strand, 33895781 - 33895893
Alignment:
Q  464 ccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccac-ttttattttatatcttatgattattctgatgtaacttgatactctt 562  Q
    ||||||||||| |||| |||| || ||||||||||||||   ||  ||||||| |||| |||| || |||| ||||||| ||||||||||| ||||||||    
T  33895781 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacttaagattattatgatgtaactt-atactctt 33895879  T
Q  563 tcagctgatttttt 576  Q
    ||||||||||||||    
T  33895880 tcagctgatttttt 33895893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 640
Target Start/End: Original strand, 54573452 - 54573494
Alignment:
Q  598 ttcttaattctagttagtatttgaaaccattaatgctaatatt 640  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  54573452 ttcttaattctagttagtatttgaaaccattaatgttaatatt 54573494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 40346117 - 40346019
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |   ||||||||| || |||||||||||||||||    
T  40346117 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattactagataaaattaaacttcaatc 40346019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 50771575 - 50771673
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||| | ||||||||| |||| |||||| | |||||  ||||| |  |  |||||||||| || ||||||| |||||||||    
T  50771575 ttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttcaatcaattactagataaaattatacttcaatc 50771673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 8753250 - 8753137
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 448  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8753250 ttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 8753151  T
Q  449 ttctcgtggttgaa 462  Q
    |||| |||||||||    
T  8753150 ttctggtggttgaa 8753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 152 - 313
Target Start/End: Original strand, 353019 - 353193
Alignment:
Q  152 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaata 238  Q
    ||||||||||||| | ||||||||| |||| | ||||||||||||| ||||||||| |||||||||  |||||||             ||||| ||||||    
T  353019 taattcacgtgcgatactagcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcggataatctattcggggtggcgaaata 353118  T
Q  239 ctcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 313  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  353119 ctcttaagcccagtgcttcgtgcacgcctcagtcaataatcgatgagtttacttattctctattctattgtattt 353193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 350 - 447
Target Start/End: Complemental strand, 32737378 - 32737281
Alignment:
Q  350 tcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    |||||||| || ||||||||||| ||||||||||||||||||||| |||||||| |||   | |||||||||||||||||||||  ||||||||||||    
T  32737378 tcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaaaggaggcatcacttgatcaattactcgacaaaggtaaacttcaatc 32737281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 586
Target Start/End: Complemental strand, 8753097 - 8752973
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttattttatatcttatgattattctgatgtaactt 553  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||       |  |||| ||||| ||||  ||| | || |||||||||||||||||    
T  8753097 gtggttgaacccattaccttgtttgggcatccatttgtaatagaagt-------caaggcctcttttgttttggatcctgtgtttattctgatgtaactt 8753005  T
Q  554 gatactctttcagctgattttttggcacttctt 586  Q
    ||||||||||||||||   ||||||||||||||    
T  8753004 gatactctttcagctg-ggttttggcacttctt 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 14802777 - 14802849
Alignment:
Q  137 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctat 209  Q
    ||||||| || ||| |||||||||||| |||||||||||| |||  ||||||||||||||| |||||||||||    
T  14802777 ttcctgaaaccttgctaattcacgtgcagtgctagcaagaagtggttgttgtatcctggagagtattagctat 14802849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 31984797 - 31984873
Alignment:
Q  137 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 215  Q
    |||||||||| ||||||||||||| ||| ||||||||| |  |||||||||||||||| |||| | |||||||||||||    
T  31984797 ttcctgagaccttgttaattcacgcgcgatgctagcaaaa--tgactgttgtatcctgtagggcactagctatgagacc 31984873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 12273588 - 12273669
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 217  Q
    |||| |||||| ||| |||||||| || ||||||||||||| |||| |||||||||||  || |||||| ||||||||||||    
T  12273588 gttcatgagaccttgctaattcacatgtggtgctagcaagaagtgattgttgtatcctaaagagtattaactatgagaccta 12273669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 14802893 - 14802959
Alignment:
Q  236 atactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 302  Q
    ||||||||||  ||||||||| ||||| ||||||| |||||||||||||||||   |||||||||||    
T  14802893 atactcttaaacccagtgttttgtgcatgcctcagccaataatcgataagtttttctattctctatt 14802959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 807670 - 807725
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatc 191  Q
    |||| |||||| |||||||||||||||||||||||| || |  |||||||||||||    
T  807670 gttcatgagaccttgttaattcacgtgcggtgctagtaaaaaatgactgttgtatc 807725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 7093692 - 7093790
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||| ||| ||||||| | |||||  ||| | |  |   ||||||||| || |||||||||||||||||    
T  7093692 ttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgttcattcaattactagataaaattaaacttcaatc 7093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 31405771 - 31405733
Alignment:
Q  152 taattcacgtgcggtgctagcaagatgtgactgttgtat 190  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  31405771 taattcacgtgcggtgttagcaagaagtgactgttgtat 31405733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 454 - 588
Target Start/End: Original strand, 15674193 - 15674325
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttattttatatcttatgattattctgatgtaactt 553  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  15674193 gtggttcaacccattaccttgtttgggcatccatctgtaataggggtctcggcacttggccacttttgttttgtatcatatgattattctgatgtaactt 15674292  T
Q  554 gatactctttcagctgattttttggcacttcttgt 588  Q
    ||||||||||||||||   ||||||||||||||||    
T  15674293 gatactctttcagctg--gttttggcacttcttgt 15674325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 19294489 - 19294592
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 448  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  19294489 ttcttgtgtttgggtgatttggattgaaagaaacgctcgggtctttaaccaaaagaaggacactcttgatcaattactcgacaaaattaaacgtcaatct 19294588  T
Q  449 ttct 452  Q
    ||||    
T  19294589 ttct 19294592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 349 - 452
Target Start/End: Complemental strand, 41768082 - 41767979
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 448  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41768082 ttcttgtgtttgggtgatttggatcgaaagaaacactcggatctttaaccaaaagaaggccactcttgatcaattactcgacaaaattaaacttcaatct 41767983  T
Q  449 ttct 452  Q
    ||||    
T  41767982 ttct 41767979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 41767929 - 41767796
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttattttatatcttatgattattctgatgtaactt 553  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  41767929 gtggttgaacccattaccttgtttgggcgtccatctgtaataggggtctcggcacttggccacttttgttttgtatcctatgattattctgatgtaactt 41767830  T
Q  554 gatactctttcagctgattttttggcacttcttgt 588  Q
     |||||||||| ||||  ||||| |||||||||||    
T  41767829 tatactctttcggctg-gtttttcgcacttcttgt 41767796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 38787029 - 38787158
Alignment:
Q  97 ataacaaatatatattaagtt-cccaaa-catccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctg 194  Q
    ||||||||||||||||||||| |||| | |||| || ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38787029 ataacaaatatatattaagtttcccagagcatctaaaagtggtttctgagactttgttaattcacatgcggtgctagcaagatgtgactgttgtatcctg 38787128  T
Q  195 gagggtattagctatgagacctactgcatcgg 226  Q
    ||| ||| || ||||  |||||||||||||||    
T  38787129 gagagtactaactat--gacctactgcatcgg 38787158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 5899911 - 5899777
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttatt-ttatatcttatgattattctgatgtaact 552  Q
    ||||||||| |||| ||||||||| |||||| || |||||| |||||||||  ||||||||||||||    || || ||| |||||||||||||||||||    
T  5899911 gtggttgaatccatcaccttgtttaggcatctatatgtaatgggggtcttggtacttggccactttttgccttgtaactt-tgattattctgatgtaact 5899813  T
Q  553 tgatactctttcagctgattttttggcacttcttgt 588  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5899812 tgatactctttcagctggttttttggcacttcttgt 5899777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 5900063 - 5899964
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 448  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||| ||||||||| |||||||||    
T  5900063 ttcttgtgtgtgggtaatttagatcgaaagaaacgctcgggtctttaaccaaaa-aaggccacttttgatcaattattcgtcaaaattaagcttcaatct 5899965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 588
Target Start/End: Original strand, 19294642 - 19294777
Alignment:
Q  454 gtggttgaacccatt-accttgtttgggcatccatttgtaataggggtcttgacacttggccactttt-attttatatcttatgattattctgatgtaac 551  Q
    |||||||||||| || |||||||||||||||| |||| |||||| ||| |   ||||||||||||||| ||||| |||| ||||||| ||||||||| ||    
T  19294642 gtggttgaacccttttaccttgtttgggcatctatttataatagcggtatcagcacttggccactttttattttgtatcctatgatt-ttctgatgtcac 19294740  T
Q  552 ttgatactctttcagctgattttttggcacttcttgt 588  Q
    |||||||||||||||||| || |||| ||||||||||    
T  19294741 ttgatactctttcagctggttgtttgccacttcttgt 19294777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 19323994 - 19324092
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  19323994 ttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 19324092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 534 - 588
Target Start/End: Original strand, 10611837 - 10611891
Alignment:
Q  534 tgattattctgatgtaacttgatactctttcagctgattttttggcacttcttgt 588  Q
    |||||||| | ||||||||||||||||||||||||| |||| |||||||||||||    
T  10611837 tgattattataatgtaacttgatactctttcagctggttttctggcacttcttgt 10611891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 18299779 - 18299681
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  18299779 ttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaattaaacttcaatc 18299681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 32575239 - 32575337
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  32575239 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 32575337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 4648345 - 4648282
Alignment:
Q  152 taattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 215  Q
    ||||||| |||| ||| |||||||| ||||||||||||||||| || ||| |||||||||||||    
T  4648345 taattcatgtgcagtgttagcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 38142009 - 38142054
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 394  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  38142009 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtcttt 38142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 30966665 - 30966707
Alignment:
Q  260 gcacgcctcagtcaataatcgataagtttacttattctctatt 302  Q
    ||||| ||||||||||||||||||||||| | |||||||||||    
T  30966665 gcacgtctcagtcaataatcgataagttttcctattctctatt 30966707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 15669461 - 15669506
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 394  Q
    ||||||||| |||||||||| ||| ||||||||| |||||||||||    
T  15669461 ttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtcttt 15669506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 29626683 - 29626728
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtcttt 394  Q
    ||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  29626683 ttcttgtgtgtgggtgatttggatagaaagaaacactcggatcttt 29626728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 33574280 - 33574147
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttattttatatcttatgattattctgatgtaactt 553  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||| | |||||| ||||||||||||| |||| |||||||||| |||||||||||    
T  33574280 gtggttgaacccattaccttgtttgaacatccatctgtaataggggtctcggcacttgaccacttttattttgtatcctatgattattatgatgtaactt 33574181  T
Q  554 gatactctttcagctgattttttggcacttcttgt 588  Q
    |||||||||||||||||| ||||| ||||||||||    
T  33574180 gatactctttcagctgat-ttttgacacttcttgt 33574147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 349 - 462
Target Start/End: Complemental strand, 33574433 - 33574320
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatct 448  Q
    ||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33574433 ttcttgtatttgggtgatctggatcgaaagaaacgctcaggcctttaaccaaaagaaggctactcttgatcaattactcgacaaaattaaacttcaatct 33574334  T
Q  449 ttctcgtggttgaa 462  Q
    |||| |||||||||    
T  33574333 ttctggtggttgaa 33574320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 45103907 - 45103774
Alignment:
Q  454 gtggttgaacccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccacttttattttatatcttatgattattctgatgtaactt 553  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |||| |||| |||||||||| |||||||||||    
T  45103907 gtggttgaactcattatcttgtttgggcatccatctgtaataggggtctcggcacttggccacttttgttttgtatcctatgattattttgatgtaactt 45103808  T
Q  554 gatactctttcagctgattttttggcacttcttgt 588  Q
     |||||||||||| ||  |||||| ||||||||||    
T  45103807 aatactctttcagttg-gtttttgacacttcttgt 45103774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 24542657 - 24542747
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 226  Q
    |||| |||||| ||| |||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||||||| | || |||||||    
T  24542657 gttcatgagaccttgctaattcacgtgcggtgctagcaagatatgattgttgtattctggagagtactagctatgagatcaaccgcatcgg 24542747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 15051516 - 15051602
Alignment:
Q  140 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggag-ggtattagctatgagacctactgcatcgg 226  Q
    ||||||| ||| |||| |||||||||||||||||||| | ||||||| ||| ||||||  ||||||||||||||| |||  |||||||    
T  15051516 ctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgtt-tattctggagaagtattagctatgagatctatcgcatcgg 15051602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 87 - 313
Target Start/End: Original strand, 47833759 - 47833996
Alignment:
Q  87 ctaataacaaataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactg 184  Q
    |||||||||||||||||||   ||| |||||||||  | ||||||  ||| ||| ||||||| | |||||| |||||||||||||||||||| | |||||    
T  47833759 ctaataacaaataacaaat---tat-aagttcccatgagcatccataagtggtttctgagacctcgttaatccacgtgcggtgctagcaagaagcgactg 47833854  T
Q  185 ttgtatcctggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagt 271  Q
    |||||| |||||| ||||||||||||||||||| ||||||||             ||||| |||||||||||||| ||| || ||| |||| ||||||||    
T  47833855 ttgtattctggagagtattagctatgagacctattgcatcggatgattcatccggggtggcgaaatactcttaagcccaatgcttcatgcatgcctcagt 47833954  T
Q  272 caataatcgataagtttacttattctctattctattgtattt 313  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  47833955 caataatcgataagtttacttgttctctattctattatattt 47833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 2079213 - 2079112
Alignment:
Q  123 acatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgca 222  Q
    |||||||| ||| |||| |||||| ||| ||||| |||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||| || |||    
T  2079213 acatccaaaagtggttcatgagaccttgctaatttacgtgcggtgttagtaagacgtgactgttgtatcctggagaatattagctatgagaccaaccgca 2079114  T
Q  223 tc 224  Q
    ||    
T  2079113 tc 2079112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 16541209 - 16541111
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| ||||||||||||||| ||||| ||| | | ||||||||| ||||||||| | |  |||||||||||||||| |||| ||| ||||||||    
T  16541209 ttcttgtgtgtgggtgatttggatcaaaagagacgttggagtctttaacaaaaagaaggcctcggttgatcaattactcgataaaactaagcttcaatc 16541111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 15759727 - 15759825
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| | |||||||||||| ||||||||| ||||||||||| | |||||  ||||| |  |  |||||||||| || |||||||||||||||||    
T  15759727 ttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactagataaaattaaacttcaatc 15759825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 25588693 - 25588774
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 218  Q
    |||| |||||| ||| ||||||||||||||||||||||||| ||||| | ||||| |||||| ||| ||||||||||| ||||    
T  25588693 gttcatgagaccttgctaattcacgtgcggtgctagcaagaagtgaccg-tgtattctggagagtactagctatgagatctac 25588774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 16540975 - 16540924
Alignment:
Q  537 ttattctgatgtaacttgatactctttcagctgattttttggcacttcttgt 588  Q
    |||||| |||||||||||||||||||||| ||  ||||||||||||||||||    
T  16540975 ttattccgatgtaacttgatactctttcaactagttttttggcacttcttgt 16540924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 96 - 313
Target Start/End: Complemental strand, 36339113 - 36338882
Alignment:
Q  96 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 193  Q
    ||||||||||||||| |||||| |||  | ||| ||| ||| ||| ||||||| ||  |||||||| ||||||||||||||||  |||||||||||||||    
T  36339113 aataacaaatatatactaagtttccatgagcattcaaaagtggtttctgagaccttactaattcacatgcggtgctagcaagaactgactgttgtatcct 36339014  T
Q  194 ggagggtattagctatgagacctactgcatcgggg-------------tggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcg 280  Q
    |||| ||| |||| | |||| |||||||||||||              ||| |||||||||||||  |||||| |||||||||||||||||||||| |||    
T  36339013 ggagagtactagccacgagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaa-ccagtgcttcgtgcacgcctcagtcaatattcg 36338915  T
Q  281 ataagtttacttattctctattctattgtattt 313  Q
    |||||||||| ||||||||||||||||||||||    
T  36338914 ataagtttacatattctctattctattgtattt 36338882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 96 - 313
Target Start/End: Original strand, 27648308 - 27648538
Alignment:
Q  96 aataacaaatatatattaagttccca--aacatccaagagtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcct 193  Q
    ||||||||||||||| ||||||||||  | ||||||  ||| |||  |||||| |||||||| || ||||||||||||||||| | ||||||||||||||    
T  27648308 aataacaaatatataataagttcccatgagcatccataagtggtttttgagaccttgttaatccatgtgcggtgctagcaagaagcgactgttgtatcct 27648407  T
Q  194 ggagggtattagctatgagacctactgcatcgg-------------ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcg 280  Q
    |||| |||||||||||||||||||  |||||||             ||||| |||||||| ||||||||| ||  |  | ||||||||| ||||||||||    
T  27648408 ggagagtattagctatgagacctatcgcatcggataatttatccaaggtggcgaaatacttttaagtccaatgcat--tccacgcctcaatcaataatcg 27648505  T
Q  281 ataagtttacttattctctattctattgtattt 313  Q
    |||||||||||| |||||||||||||| |||||    
T  27648506 ataagtttacttgttctctattctattatattt 27648538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 302
Target Start/End: Complemental strand, 44686295 - 44686118
Alignment:
Q  137 ttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg---------- 226  Q
    |||||||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||  |||||||              
T  44686295 ttcctgagaccttgctaatccacgtgcggtgctagcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataacttatc 44686196  T
Q  227 ---ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 302  Q
       ||||| |||||||||||||| ||||||  |  |||| |||||||||||||||||| |||||| | |||||||||||    
T  44686195 cgaggtggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatcgagaagttttc-tattctctatt 44686118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 26690624 - 26690565
Alignment:
Q  227 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagttt 288  Q
    |||||||||||||||||||||||| ||| |  | ||||||||| ||||||||||||||||||    
T  26690624 ggtggtgaaatactcttaagtccaatgtat--tacacgcctcattcaataatcgataagttt 26690565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 24734423 - 24734249
Alignment:
Q  140 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatc-------------gg 226  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||             ||    
T  24734423 ctgagaccttgctaattcacatgcggtgctagtaagatgtgactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatctgg 24734324  T
Q  227 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctatt 302  Q
    ||||| ||| ||||||||||| | ||| ||||||||| |||||||||||||| ||||||||| | |||||||||||    
T  24734323 ggtggcgaagtactcttaagttcggtgcttcgtgcacacctcagtcaataattgataagttttc-tattctctatt 24734249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 359 - 462
Target Start/End: Complemental strand, 20692402 - 20692299
Alignment:
Q  359 tgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatctttctcgtggt 458  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||     
T  20692402 tgggtgatttgaatcgaaataaacgcttgggtatttaaccaaaagaatgtcactcttgatcaattactcgacaaaattaaccttcaatcttactggtggc 20692303  T
Q  459 tgaa 462  Q
    ||||    
T  20692302 tgaa 20692299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 53837662 - 53837482
Alignment:
Q  140 ctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg------------- 226  Q
    ||||||| ||| |||||||  |||||||||||||| | |||| |||||||||||| || |||||| |||||||| |||  |||||||                 
T  53837662 ctgagaccttgctaattcatatgcggtgctagcaaaaagtgattgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatccga 53837563  T
Q  227 ggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctatt 307  Q
    ||||| |||||||||||||| ||| |  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53837562 ggtggcgaaatactcttaagcccaatacttcatgcacgcctcagtcaataatcgataagtttacttgttctctattctatt 53837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 136 - 313
Target Start/End: Complemental strand, 53834068 - 53833878
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcat------------ 223  Q
    ||||||||||| ||| |||||||| ||||||||||| |||| |||| |||||||||||| || |||||||||||||||||||  ||||                
T  53834068 gttcctgagaccttgctaattcacatgcggtgctaggaagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcgggttatttat 53833969  T
Q  224 -cggggtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 313  Q
     |||| |||  |||||||||| || |||||| ||| |||||||||||  |||||||||||||||||| || ||||||||| |||| |||||    
T  53833968 ccgggatggcaaaatactcttcagcccagtgcttcatgcacgcctcaaccaataatcgataagtttagttgttctctattatattatattt 53833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 583
Target Start/End: Complemental strand, 20692249 - 20692130
Alignment:
Q  464 ccattaccttgtttgggcatccatttgtaataggggtcttgacacttggccactttta-ttttatatcttatgattattctgatgtaacttgatactctt 562  Q
    |||||||||||||| |||||| || |||||||||||||||| |||||||||||||||  |||| || ||  |||||||| |||||||| || ||||||||    
T  20692249 ccattaccttgtttaggcatctatatgtaataggggtcttggcacttggccactttttgttttgtaactc-tgattattttgatgtaatttaatactctt 20692151  T
Q  563 tcagctgattttttggcactt 583  Q
    |||| ||||||| || |||||    
T  20692150 tcagttgattttctgacactt 20692130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 16196840 - 16196750
Alignment:
Q  136 gttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatcgg 226  Q
    |||| |||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||  ||| ||||||||| ||| || |||||||    
T  16196840 gttcatgagaccttgttaattcacatgcggtgctagcaagaagtgattgttgtatcatggaaagtactagctatgaaaccaaccgcatcgg 16196750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 3083783 - 3083846
Alignment:
Q  154 attcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagaccta 217  Q
    |||||| |||||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||    
T  3083783 attcacatgcggtgctagcaagaagtgactgctgtattctgaagagtattagctatgagaccta 3083846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 53459241 - 53459143
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  53459241 ttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatc 53459143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7910381 - 7910318
Alignment:
Q  155 ttcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctac 218  Q
    ||||| ||||||| |||||||| ||||||||||||||||| || ||| |||| |||||| ||||    
T  7910381 ttcacatgcggtgttagcaagaagtgactgttgtatcctgaagagtactagccatgagatctac 7910318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 141 - 313
Target Start/End: Original strand, 33827499 - 33827684
Alignment:
Q  141 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacctactgcatc-------------ggg 227  Q
    |||||| ||| |||| |||||||||||||||||||| | || ||||||||||||||| |||||| ||||||||||||  |||||             |||    
T  33827499 tgagaccttgctaatccacgtgcggtgctagcaagaagcgattgttgtatcctggagagtattatctatgagacctatcgcatcaggtgattcatccggg 33827598  T
Q  228 gtggtgaaatactcttaagtccagtgtttcgtgcacgcctcagtcaataatcgataagtttacttattctctattctattgtattt 313  Q
    ||||  ||||||||||||| |||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||||||| |||||    
T  33827599 gtggcaaaatactcttaagcccagtgcttcgtgcacgcctcagtcaatgaccgataaatttacttgttctctattctattatattt 33827684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 33545068 - 33544976
Alignment:
Q  124 catccaaga-gtagttcctgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 215  Q
    ||||||||| || |||||||| | |||  ||||||||||||| ||||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  33545068 catccaagaagttgttcctgatatttttctaattcacgtgcgatgctagcaagatgtgactgctgtatcatggagagtactagctatgagacc 33544976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 40973605 - 40973507
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||| | |||||  ||| | |  |  |||||||||| || |||||||||||||||||    
T  40973605 ttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataaaattaaacttcaatc 40973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 17895633 - 17895707
Alignment:
Q  141 tgagactttgttaattcacgtgcggtgctagcaagatgtgactgttgtatcctggagggtattagctatgagacc 215  Q
    |||||| ||| || |||| |||||||| |||||||| |||| ||||||||||||||| ||| ||||| |||||||    
T  17895633 tgagaccttgctagttcatgtgcggtgttagcaagaagtgattgttgtatcctggagagtactagctgtgagacc 17895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 25982512 - 25982414
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||| ||| |||||||||||||| ||||||||||| || |||||| | |||||  ||||| |  |  |||||||||| || |||||||||||||||||    
T  25982512 ttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttccatcaattactagataaaattaaacttcaatc 25982414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 8870 - 8968
Alignment:
Q  349 ttcttgtgtttgggtgatttggatcgaaagaaacgctcgggtctttaaccaaaagaaggtcactcttgatcaattactcgacaaaattaaacttcaatc 447  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| | | |||  ||| | |  || |||||||||| || |||||||||||||||||    
T  8870 ttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgtttcatcaattactagataaaattaaacttcaatc 8968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University