View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_high_31 (Length: 391)

Name: NF11537_high_31
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_high_31
NF11537_high_31
[»] chr3 (5 HSPs)
chr3 (17-383)||(18536066-18536432)
chr3 (22-159)||(18550328-18550466)
chr3 (298-377)||(18550614-18550695)
chr3 (19-159)||(18678803-18678940)
chr3 (55-105)||(18651692-18651742)
[»] scaffold0386 (5 HSPs)
scaffold0386 (17-337)||(4355-4675)
scaffold0386 (35-175)||(10411-10552)
scaffold0386 (35-165)||(7399-7530)
scaffold0386 (299-371)||(7181-7255)
scaffold0386 (299-366)||(10206-10275)
[»] chr4 (25 HSPs)
chr4 (19-372)||(5692052-5692403)
chr4 (19-377)||(5685835-5686187)
chr4 (19-276)||(5615596-5615853)
chr4 (19-289)||(9276329-9276599)
chr4 (19-287)||(9183680-9183948)
chr4 (19-377)||(5719615-5719969)
chr4 (30-167)||(9246078-9246215)
chr4 (19-170)||(9195990-9196140)
chr4 (19-167)||(9244896-9245043)
chr4 (19-192)||(9287310-9287480)
chr4 (19-167)||(9205417-9205568)
chr4 (19-167)||(9209636-9209787)
chr4 (35-277)||(5678724-5678955)
chr4 (297-377)||(9245863-9245945)
chr4 (19-159)||(5748765-5748902)
chr4 (297-377)||(9195475-9195557)
chr4 (297-377)||(9287111-9287193)
chr4 (55-105)||(5761786-5761836)
chr4 (55-105)||(5768326-5768376)
chr4 (55-105)||(5727922-5727972)
chr4 (55-105)||(5763919-5763969)
chr4 (55-105)||(5766082-5766132)
chr4 (335-377)||(9205211-9205253)
chr4 (335-377)||(9209430-9209472)
chr4 (335-377)||(9244703-9244745)
[»] scaffold1826 (1 HSPs)
scaffold1826 (19-167)||(134-282)
[»] scaffold0959 (2 HSPs)
scaffold0959 (19-167)||(3686-3834)
scaffold0959 (297-371)||(3477-3553)
[»] scaffold0753 (4 HSPs)
scaffold0753 (19-167)||(1975-2123)
scaffold0753 (86-167)||(1-82)
scaffold0753 (297-377)||(215-297)
scaffold0753 (218-277)||(2150-2209)
[»] scaffold0135 (14 HSPs)
scaffold0135 (19-167)||(3500-3651)
scaffold0135 (19-167)||(7715-7866)
scaffold0135 (19-167)||(11930-12081)
scaffold0135 (19-167)||(16145-16296)
scaffold0135 (19-167)||(20360-20511)
scaffold0135 (19-167)||(24575-24726)
scaffold0135 (19-167)||(28790-28941)
scaffold0135 (335-377)||(3294-3336)
scaffold0135 (335-377)||(7509-7551)
scaffold0135 (335-377)||(11724-11766)
scaffold0135 (335-377)||(15939-15981)
scaffold0135 (335-377)||(20154-20196)
scaffold0135 (335-377)||(24369-24411)
scaffold0135 (335-377)||(28584-28626)
[»] scaffold1952 (1 HSPs)
scaffold1952 (19-84)||(1-66)
[»] chr7 (1 HSPs)
chr7 (55-160)||(19307487-19307592)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 18536066 - 18536432
Alignment:
Q  17 tcaactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatg 116  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18536066 tcaactatttaattatttctatgagacaattcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatg 18536165  T
Q  117 gttaaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacgg 216  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18536166 gttaaaactccgaagtcagtttatgttctaattctatttctttccatattttttagcatcacagtttctaattcttttaacagtaagatagtttttacgg 18536265  T
Q  217 attgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttcta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18536266 attgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttcta 18536365  T
Q  317 tagcaagagacttgtagaataccttatgctagaatatttcacttgttgtcttttactttttctgtgc 383  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  18536366 tagcaagagacttgtagaataccttatgctagaatattccacttgttgtcttttactttttttgtgc 18536432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 18550328 - 18550466
Alignment:
Q  22 tatttaattatttctataagaca--atgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggtt 119  Q
    ||||||||||||||  ||||| |  ||| ||||| ||||||| |||||| ||| ||| |||||||||||||||||||||||||| |  ||||||||||||    
T  18550328 tatttaattatttcattaagagaccatgaaatttcttatacactataaatagatcaagtcatttactattatttggatgcaaattg-aaaaaatatggtt 18550426  T
Q  120 aaaactccgaagttagtttctgttctaattctatttcttt 159  Q
    ||||| ||||| || |||| ||||||||||||| ||||||    
T  18550427 aaaacaccgaaattggtttatgttctaattctaattcttt 18550466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 18550614 - 18550695
Alignment:
Q  298 gataaatgagttttttctatagcaagagacttgta--gaataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||| || ||||| ||||| |||| |||||  | |||||||||||||||||||||||||||||||| |||| |||||    
T  18550614 gataaatgaattctttctttagcaggagaattgtacggtataccttatgctagaatatttcacttgttgtcatttagttttt 18550695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 18678803 - 18678940
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||| |||||||  ||| | |   ||||||| |||||||||| ||| |||||||||| | ||| ||||||| |||  ||||||||||     
T  18678803 aactatttaattatttttataagatcatgaact---ttatacactataaagagatcaagtcatttactaatgtttagatgcaagtaggaaaaaatatggc 18678899  T
Q  119 taaaactccgaagttagtttctgttctaattctatttcttt 159  Q
    ||||||||  ||| | |||| |||| || ||||||||||||    
T  18678900 taaaactcttaagatggtttatgttttagttctatttcttt 18678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 18651692 - 18651742
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| ||||||||||||||||  ||||||||||    
T  18651692 ttatacattataaagagatcaagtcatttactattatttacatgcaaatag 18651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 4675 - 4355
Alignment:
Q  17 tcaactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatg 116  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  4675 tcaactatttaattatttctataggaccatgcaatttatgatacactataaagagaccaactcatttactattatttcggtgcaaatagttaaaaatatg 4576  T
Q  117 gttaaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacgg 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |  | ||| ||||||||||  |     
T  4575 gttaaaactccgaagttagtttatgttctaattctatttctttccatatgttttagcatcacaatttctaattcttctttcggtaggatagtttattgga 4476  T
Q  217 attgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttcta 316  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||  ||||||||| || ||| || |||||||||||||||||||||    
T  4475 attgtaaaacagataaagattgtaaacaacatcgaggatttaattttaggtgtcgtagcggaaattgtatacccataagaagataaatgagttttttcta 4376  T
Q  317 tagcaagagacttgtagaata 337  Q
    |||||||||||||||||||||    
T  4375 tagcaagagacttgtagaata 4355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 10552 - 10411
Alignment:
Q  35 ctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaata-gttaaaaatatggttaaaactccgaagtt 133  Q
    ||||||||||||| |||||||||||||  | |||||||  |||||| ||||||||||||||||||||||| |  |||||||||||||||| | |||| ||    
T  10552 ctataagacaatgaaatttattatacacgacaaagagattaactcaattactattatttggatgcaaataggaaaaaaatatggttaaaagttcgaattt 10453  T
Q  134 agtttctgttctaattctatttctttctatattttttagcat 175  Q
    ||| | |||||| |||||||||||||| |||||| |||||||    
T  10452 agtatatgttcttattctatttctttccatatttcttagcat 10411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 7530 - 7399
Alignment:
Q  35 ctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaa--atatggttaaaactccgaagt 132  Q
    ||||||||||||| |||||||||||||  |||||||||  || |||||||||||||||| |||||||||| | ||||  |||||||||||| | ||||||    
T  7530 ctataagacaatgaaatttattatacacgataaagagattaagtcatttactattattttgatgcaaata-tgaaaagtatatggttaaaagtacgaagt 7432  T
Q  133 tagtttctgttctaattctatttctttctatat 165  Q
    ||| || ||||||||||||||||||||| ||||    
T  7431 tagcttatgttctaattctatttctttccatat 7399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 7255 - 7181
Alignment:
Q  299 ataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtctttta 371  Q
    ||||||||||| ||||| |||||||||| ||||| ||||  ||||||||||||||||| ||||||||||| ||||    
T  7255 ataaatgagttctttctctagcaagagaattgtacaatataccttatgctagaatattccacttgttgtcgttta 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 10275 - 10206
Alignment:
Q  299 ataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtc 366  Q
    ||||||||||| ||||| |||||||||| ||||| ||||  ||||| ||||||||||| |||||||||||    
T  10275 ataaatgagttctttctctagcaagagaattgtacaatataccttacgctagaatattccacttgttgtc 10206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 5692052 - 5692403
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||  |||||||||||    
T  5692052 aactatttaattatttctataataccatgcaatttattatacactataaagagatcaactcatttacaattatttggatg-aaataggaaaaaatatggt 5692150  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacggat 218  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |  | ||| | ||  || |   |||    
T  5692151 taaaacttcgaagtttgtttatgttctaattctatttctttccatattttttagcatcatagtttctaattcttctcccggtaggttatcttttggtgat 5692250  T
Q  219 tgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttctata 318  Q
    ||||||| |||||||||||||| ||| | |||||||  || ||||||||||||||||||||| |||||| |   ||| ||||||||||||| ||||||||    
T  5692251 tgtaaaatagataaagattgtccaaaacttcgaggaggtagttttaggtgtcgtaaaggaaaatgtgta-ctcgaatgagataaatgagttctttctata 5692349  T
Q  319 gcaagagacttgtagaataccttatgctagaatatttcacttgttgtcttttac 372  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||    
T  5692350 gcaagagacttgtacaatacattatgctagaatattccacttgttgtcatttac 5692403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 5685835 - 5686187
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||  ||||||||||     
T  5685835 aactatttaattatttctataagacgatacaatttattatacactataaagagattaactcatttactattatttggattcaaataggaaaaaatatggc 5685934  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacg-ga 217  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||     ||||||| |||||  | ||    
T  5685935 taaaactccgaagttagtttatgttctaattctatttctttccataatttttagcatcatagtttctaattcttttcctgataagata-tttattggtga 5686033  T
Q  218 ttgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttctat 317  Q
    |||||||||||||||||||||| ||    | |||||| ||||||||||||||||||||||||| ||| || ||     |||||||||||||| |||||||    
T  5686034 ttgtaaaacagataaagattgtaaaccaaaacgaggagttaattttaggtgtcgtaaaggaaaatgt-tatcc-----aagataaatgagttctttctat 5686127  T
Q  318 agcaagagacttgtagaataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||||||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||    
T  5686128 agcaagagacttgtacaatactttatgttagaaaattccacttgttgtcatttacttttt 5686187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 5615853 - 5615596
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||||||||| ||| |||| |||||||| |||||||||| ||| |||||||||||||||||||  |||||||  |||||||||||    
T  5615853 aactatttaattatttctataagactatgaaattgattatacaatataaagagatcaagtcatttactattatttggacacaaatagagaaaaatatggt 5615754  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacggat 218  Q
      |||||||||||||||||| |||| | |||||||||||||| |||||| || |||| | ||| |||||||||| |   |||||||   || | | || |    
T  5615753 ggaaactccgaagttagtttatgtttttattctatttctttccatatttctttgcataatagtatctaattcttcttttagtaagacttttgacagggct 5615654  T
Q  219 tgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaag 276  Q
    ||||||||||||||||||||||  || | ||||||| ||||| |||||||||||||||    
T  5615653 tgtaaaacagataaagattgtcctaaacttcgaggagttaatgttaggtgtcgtaaag 5615596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 9276599 - 9276329
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||||| |||||| ||| | |||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||    
T  9276599 aactatttaattatttctctaagaccatgaactttactatacattataaagagatcaagtcatttactattatttggatgcaaataggaaaaaatatggt 9276500  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacggat 218  Q
    | |||||| ||||||||||| |||| ||||| ||||| ||||||||||| || ||||  |||| |||||||||| |   ||| ||||  || | |  | |    
T  9276499 tgaaactctgaagttagtttatgttataattttatttttttctatatttctttgcatagcagtatctaattcttcttttagtgagattattgacagtgct 9276400  T
Q  219 tgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagc 289  Q
    |||||||||||||||||||||| ||| | ||    | ||||| |||||||||||||||| || ||||||||    
T  9276399 tgtaaaacagataaagattgtccaaaacttcataaagttaatgttaggtgtcgtaaaggcaaatgtgtagc 9276329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 9183948 - 9183680
Alignment:
Q  19 aactatttaattatttctataagacaatgcaattt-attatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatgg 117  Q
    |||||||||||||||||| |||||| ||| | ||| | |||||| |||||| ||| ||| ||||| ||||||||||||||||||||||  ||||||||||    
T  9183948 aactatttaattatttctctaagaccatgaatttttactatacactataaaaagatcaagtcatt-actattatttggatgcaaataggaaaaaatatgg 9183850  T
Q  118 ttaaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacgga 217  Q
    || |||||||||||||||||| | || ||||| ||||||||||||||||| || |||| ||||| |||||||||| |   ||| ||||  || |||  |     
T  9183849 ttgaaactccgaagttagtttattttataattttatttctttctatatttctttgcataacagtatctaattcttcttttagtcagatttttaatagtgc 9183750  T
Q  218 ttgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgta 287  Q
    ||||||||||||||||||||||| |||   | || || ||||| |||||||||||||||| |||||||||    
T  9183749 ttgtaaaacagataaagattgtccaaaatttggaagagttaatgttaggtgtcgtaaaggcaattgtgta 9183680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 5719969 - 5719615
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||| | ||| ||| | ||||||||||| |||||| | | ||| ||||||||||||||||||||||||||||  |  |||||||     
T  5719969 aactatttaattatttctacatgacgatgaactttattatacactataaacaaatcaagtcatttactattatttggatgcaaataggaagtaatatggc 5719870  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagttta-tacgga 217  Q
    | |||||  ||||||||||| |||| |||||||||||||||| |||||| || |||| ||| | |||||||||     |  | ||  | |||| | | |     
T  5719869 tgaaactatgaagttagtttatgttataattctatttctttccatatttcttggcataacattatctaattct----gcttttagtcattttattccagg 5719774  T
Q  218 ttgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaaggaaattgtgtagccaaaataagataaatgagttttttctat 317  Q
     |||||||||||||||||||||| |||   |   |||| |||| |||||||||||||||| || ||||||    || |  |||||||||||| ||||| |    
T  5719773 ctgtaaaacagataaagattgtccaaaattttatggatctaatgttaggtgtcgtaaaggcaaatgtgta---caattgggataaatgagttctttctct 5719677  T
Q  318 agcaagagacttgtaga--ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||| ||||| |  |||||| ||||||||||||||||||||||||| |||| |||||    
T  5719676 agcaagagaattgtacaatatacctcatgctagaatatttcacttgttgtcatttagttttt 5719615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 9246215 - 9246078
Alignment:
Q  30 tatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggttaaaactccga 129  Q
    |||||||||||||| ||| | |||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||| |||||| ||    
T  9246215 tatttctataagaccatgaactttactatacactataaagagatcaagtcatttactattatttggatgcaaataggaaaaaatatggttgaaactctga 9246116  T
Q  130 agttagtttctgttctaattctatttctttctatattt 167  Q
    |||| |||| |||| || || |||||||||||||||||    
T  9246115 agtttgtttatgttatacttttatttctttctatattt 9246078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 9196140 - 9195990
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||||||||| ||| | |||| |||||| |||||||| | ||| | |||||||||| |||||||||||||||  |||||||||||    
T  9196140 aactatttaattatttctataagaccatgaactttactatacactataaagaaatcaagttatttactattctttggatgcaaataggaaaaaatatggt 9196041  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatatttttt 170  Q
    | ||||||||||||||| || |||  ||||| | ||||||||||||||||||    
T  9196040 tgaaactccgaagttagattatgtcataatt-tttttctttctatatttttt 9195990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 9245043 - 9244896
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||||| |||||| ||| | ||||| ||||| |||||||||| | | ||||||||||||||||||||||||||||  |||||||||||    
T  9245043 aactatttaattatttctctaagaccatgaactttat-atacactataaagagatcgagtcatttactattatttggatgcaaataggaaaaaatatggt 9244945  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    | ||| |||||||||||||| | || ||||| || || |||||||||||    
T  9244944 tgaaattccgaagttagtttattttataattttaattttttctatattt 9244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 9287480 - 9287310
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||||| |||||| ||  | ||||||||||| |||||||||| ||| |||||||||| |||||||||||||||||  |||||||||||    
T  9287480 aactatttaattatttctctaagaccat--attttattatacactataaagagatcaagtcatttactagtatttggatgcaaatag-gaaaaatatggt 9287384  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattttttagcatcacagtttctaattctt 192  Q
    | ||||||| ||||| |||| |||| || ||||| ||||||| |||||| || |||| ||| | | ||||||||    
T  9287383 tcaaactccaaagttggtttatgttatagttctacttctttccatatttcttggcatgacaatatgtaattctt 9287310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 9205568 - 9205417
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  9205568 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 9205469  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  9205468 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 9205417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 9209787 - 9209636
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| |     
T  9209787 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaaa 9209688  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| ||||||| |||||||||    
T  9209687 gggtgaaactccgaagttagtttatgttataattttatttctctctatattt 9209636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 277
Target Start/End: Original strand, 5678724 - 5678955
Alignment:
Q  35 ctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggttaaaactccgaagtta 134  Q
    ||||||||||||| |||||||||||||  |||||||||  ||  ||||||||||||||| ||           ||||||| |||||||| ||| ||||||    
T  5678724 ctataagacaatgaaatttattatacacgataaagagattaaaacatttactattatttagaa----------aaaaata-ggttaaaagtccaaagtta 5678812  T
Q  135 gtttctgttctaattctatttctttctatattttttagcatcacagtttctaattcttttaacagtaagatagtttatacggattgtaaaacagataaag 234  Q
    |||| | ||||||||||||||||| | |||||| ||||||| | ||| || ||||||| |  |||||||||  || |    | |||||||||| | ||||    
T  5678813 gtttatattctaattctatttcttcccatatttcttagcataatagtatccaattcttctttcagtaagatttttgaccgtgcttgtaaaacaaagaaag 5678912  T
Q  235 attgtcaaaaccatcgaggatttaattttaggtgtcgtaaagg 277  Q
    |||||| ||| | | ||||| ||||| ||||||||| ||||||    
T  5678913 attgtccaaaactttgaggagttaatgttaggtgtcataaagg 5678955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 9245945 - 9245863
Alignment:
Q  297 agataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||||||| ||||| |||||||||| ||||| ||||  || |||||||||||||| ||||||||||| |||| |||||    
T  9245945 agataaatgagttctttctctagcaagagaattgtacaatataccctatgctagaatattccacttgttgtcatttagttttt 9245863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 5748765 - 5748902
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||| |||||||  ||| | |   ||||||| |||||||||| ||| |||||||||| | ||| ||||||| |||  ||||||||||     
T  5748765 aactatttaattatttttataagatcatgaact---ttatacactataaagagatcaagtcatttactaatgtttagatgcaagtaggaaaaaatatggc 5748861  T
Q  119 taaaactccgaagttagtttctgttctaattctatttcttt 159  Q
    ||||||||  ||| | |||| |||| || ||||||||||||    
T  5748862 taaaactcttaagatggtttatgttttagttctatttcttt 5748902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 9195557 - 9195475
Alignment:
Q  297 agataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||||||| ||||| || ||||||| ||||| ||||  ||||||||||||||||| || |||||||| |||| |||||    
T  9195557 agataaatgagttctttctctaacaagagaattgtacaatataccttatgctagaatattccatttgttgtcatttagttttt 9195475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 9287193 - 9287111
Alignment:
Q  297 agataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||| ||||| ||||| |||||||||| ||||| ||||  ||||||||||||||||| ||| ||||||| |||| |||||    
T  9287193 agataaacgagttctttctctagcaagagaattgtacaatataccttatgctagaatattccacatgttgtcatttagttttt 9287111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5761786 - 5761836
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||||||||    
T  5761786 ttatacattataaagagatcaagtcatttactattatttagatgcaaatag 5761836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5768326 - 5768376
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||||||||    
T  5768326 ttatacattataaagagatcaagtcatttactattatttagatgcaaatag 5768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5727922 - 5727972
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| ||||||||||||||||  ||||||||||    
T  5727922 ttatacattataaagagatcaagtcatttactattatttacatgcaaatag 5727972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5763919 - 5763969
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| ||||||||||||||||  ||||||||||    
T  5763919 ttatacattataaagagatcaagtcatttactattatttacatgcaaatag 5763969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5766082 - 5766132
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatag 105  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||| ||||||    
T  5766082 ttatacattataaagagatcaagtcatttactattatttagatgtaaatag 5766132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 9205253 - 9205211
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  9205253 ataccttatgctagaatattccacttgttgtcatttagttttt 9205211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 9209472 - 9209430
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  9209472 ataccttatgctagaatattccacttgttgtcatttagttttt 9209430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 9244745 - 9244703
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  9244745 ataccttatgctagaatattccacttgttgtcatttagttttt 9244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 282 - 134
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||||||||| ||| | |||| |||||| |||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||    
T  282 aactatttaattatttctataagaccatgaactttactatacactataaagagatcaagtcatttattattatttggatgcaaataggaaaaaatatggt 183  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    | |||||| ||||||||||| |||| || || |||||||||||||||||    
T  182 tgaaactcagaagttagtttatgttatacttttatttctttctatattt 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 3834 - 3686
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    ||||||||||||||||||||||||| ||| | |||| |||||| |||||||||| ||| |||||||||||||||||||||| |||||  ||||| |||||    
T  3834 aactatttaattatttctataagaccatgaactttactatacactataaagagatcaagtcatttactattatttggatgctaataggaaaaaagatggt 3735  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    | |||||| ||||||| ||| |||| ||  | |||||||||||||||||    
T  3734 tgaaactctgaagttaatttatgttatacatttatttctttctatattt 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 3553 - 3477
Alignment:
Q  297 agataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtctttta 371  Q
    ||||||||||||| ||||| ||||||||||  |||| ||||  ||||||||||||||||| ||||||||||| ||||    
T  3553 agataaatgagttctttctctagcaagagaactgtacaataaaccttatgctagaatattccacttgttgtcattta 3477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 1975 - 2123
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggt 118  Q
    |||||||||||||||||| |||||| ||| | |||| | |||| |||||||||| | | ||||||||||||||||||||||||||||  |||||||||||    
T  1975 aactatttaattatttctctaagaccatgaactttactgtacactataaagagatcgagtcatttactattatttggatgcaaataggaaaaaatatggt 2074  T
Q  119 taaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    | ||| |||||||||||||| |||| ||||| || || |||||||||||    
T  2075 tgaaattccgaagttagtttatgttataattttacttttttctatattt 2123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 1 - 82
Alignment:
Q  86 tattatttggatgcaaatagttaaaaatatggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||||| |||| || || |||||||||||||||||    
T  1 tattatttggatgcaaataggaaaaaatatggttgaaactcagaagttagtttatgttatacttttatttctttctatattt 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 215 - 297
Alignment:
Q  297 agataaatgagttttttctatagcaagagacttgtagaata--ccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    ||||||||||||| ||||| |||||||||| ||||| ||||  || |||||||||||||| ||||||||||| |||| |||||    
T  215 agataaatgagttctttctctagcaagagaattgtacaatattccctatgctagaatattccacttgttgtcatttagttttt 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 2150 - 2209
Alignment:
Q  218 ttgtaaaacagataaagattgtcaaaaccatcgaggatttaattttaggtgtcgtaaagg 277  Q
    ||||||||| ||||||||||||| ||| | | ||||| ||||| ||||||||||||||||    
T  2150 ttgtaaaactgataaagattgtccaaaactttgaggagttaatgttaggtgtcgtaaagg 2209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 3651 - 3500
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  3651 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 3552  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  3551 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 3500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 7866 - 7715
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  7866 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 7767  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  7766 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 7715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 12081 - 11930
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  12081 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 11982  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  11981 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 11930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 16296 - 16145
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  16296 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 16197  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  16196 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 16145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 20511 - 20360
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  20511 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 20412  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  20411 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 20360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 24726 - 24575
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  24726 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 24627  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  24626 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 24575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 28941 - 28790
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcatttactattatttggatgcaaatag---ttaaaaatat 115  Q
    ||||||||||||||||||| ||||  ||| | |||| |||||| |||||| ||| ||| |||||||||||| |||||||||||||||     ||||| ||    
T  28941 aactatttaattatttctacaagagcatgaactttactatacactataaatagatcaagtcatttactattctttggatgcaaataggaagaaaaaaaat 28842  T
Q  116 ggttaaaactccgaagttagtttctgttctaattctatttctttctatattt 167  Q
    || | |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  28841 gggtgaaactccgaagttagtttatgttataattttatttctttctatattt 28790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 3336 - 3294
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  3336 ataccttatgctagaatattccacttgttgtcatttagttttt 3294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 7551 - 7509
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  7551 ataccttatgctagaatattccacttgttgtcatttagttttt 7509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 11766 - 11724
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  11766 ataccttatgctagaatattccacttgttgtcatttagttttt 11724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 15981 - 15939
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  15981 ataccttatgctagaatattccacttgttgtcatttagttttt 15939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 20196 - 20154
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  20196 ataccttatgctagaatattccacttgttgtcatttagttttt 20154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 24411 - 24369
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  24411 ataccttatgctagaatattccacttgttgtcatttagttttt 24369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 28626 - 28584
Alignment:
Q  335 ataccttatgctagaatatttcacttgttgtcttttacttttt 377  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  28626 ataccttatgctagaatattccacttgttgtcatttagttttt 28584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1952 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1952
Description:

Target: scaffold1952; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 66 - 1
Alignment:
Q  19 aactatttaattatttctataagacaatgcaatttattatacagtataaagagaccaactcattta 84  Q
    ||||||||||||||||||||||||| ||| | |||| |||||| |||||||||| ||| |||||||    
T  66 aactatttaattatttctataagaccatgaactttactatacactataaagagatcaagtcattta 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 19307487 - 19307592
Alignment:
Q  55 ttatacagtataaagagaccaactcatttactattatttggatgcaaatagttaaaaatatggttaaaactccgaagttagtttctgttctaattctatt 154  Q
    ||||||| |||||||||| ||| |||| ||  ||| ||| |||||||| || ||||||||||| | |||||  |||||| |||| | |||||||||||||    
T  19307487 ttatacactataaagagatcaaatcatatatgattttttagatgcaaaaaggtaaaaatatggatgaaactatgaagtttgtttatattctaattctatt 19307586  T
Q  155 tctttc 160  Q
    ||||||    
T  19307587 tctttc 19307592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University