View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_high_32 (Length: 391)

Name: NF11537_high_32
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_high_32
NF11537_high_32
[»] chr2 (7 HSPs)
chr2 (1-282)||(35149499-35149780)
chr2 (4-282)||(35127495-35127776)
chr2 (283-376)||(39812186-39812278)
chr2 (306-376)||(32246601-32246671)
chr2 (305-376)||(44312822-44312892)
chr2 (306-376)||(19344237-19344307)
chr2 (306-376)||(19349095-19349165)
[»] chr6 (12 HSPs)
chr6 (283-375)||(28184297-28184388)
chr6 (283-376)||(14737775-14737866)
chr6 (283-376)||(14742634-14742725)
chr6 (283-376)||(28155769-28155861)
chr6 (307-348)||(6005234-6005275)
chr6 (307-348)||(33336171-33336212)
chr6 (305-376)||(11856788-11856858)
chr6 (307-348)||(16838561-16838602)
chr6 (307-348)||(33330674-33330715)
chr6 (305-376)||(22010895-22010965)
chr6 (307-372)||(6438319-6438383)
chr6 (307-348)||(5343297-5343338)
[»] scaffold0355 (2 HSPs)
scaffold0355 (283-376)||(9838-9930)
scaffold0355 (284-348)||(108-170)
[»] scaffold0127 (1 HSPs)
scaffold0127 (281-376)||(34147-34241)
[»] chr1 (7 HSPs)
chr1 (281-376)||(41386541-41386635)
chr1 (307-376)||(25445288-25445357)
chr1 (283-373)||(41398032-41398121)
chr1 (306-376)||(44024071-44024141)
chr1 (307-376)||(1055210-1055279)
chr1 (307-376)||(39445317-39445386)
chr1 (307-376)||(43988664-43988734)
[»] chr5 (9 HSPs)
chr5 (306-376)||(28807773-28807843)
chr5 (306-376)||(37561644-37561715)
chr5 (307-348)||(2785192-2785233)
chr5 (310-376)||(37556822-37556889)
chr5 (307-348)||(31397220-31397261)
chr5 (307-348)||(31402077-31402118)
chr5 (307-348)||(33767996-33768037)
chr5 (307-348)||(33791133-33791174)
chr5 (312-376)||(1457360-1457423)
[»] chr7 (11 HSPs)
chr7 (307-376)||(19992130-19992199)
chr7 (283-376)||(24024526-24024618)
chr7 (282-376)||(31109781-31109873)
chr7 (305-376)||(12396728-12396798)
chr7 (305-376)||(12406148-12406218)
chr7 (305-376)||(4866546-4866616)
chr7 (306-376)||(21812437-21812507)
chr7 (307-348)||(16879889-16879930)
chr7 (307-348)||(16884745-16884786)
chr7 (307-348)||(24261551-24261592)
chr7 (307-348)||(24266430-24266471)
[»] chr4 (9 HSPs)
chr4 (307-376)||(18855544-18855613)
chr4 (282-376)||(9229392-9229485)
chr4 (306-376)||(3813840-3813910)
chr4 (283-376)||(5732458-5732548)
chr4 (305-376)||(9224605-9224675)
chr4 (306-376)||(45348016-45348085)
chr4 (306-376)||(45357495-45357564)
chr4 (312-376)||(51520280-51520343)
chr4 (311-374)||(56146912-56146974)
[»] scaffold0135 (1 HSPs)
scaffold0135 (282-376)||(35260-35353)
[»] chr8 (5 HSPs)
chr8 (306-376)||(39785022-39785092)
chr8 (283-376)||(25328476-25328568)
chr8 (307-348)||(35745208-35745249)
chr8 (312-376)||(6311121-6311184)
chr8 (307-348)||(10684492-10684533)
[»] chr3 (8 HSPs)
chr3 (282-376)||(22173393-22173485)
chr3 (306-376)||(2677286-2677357)
chr3 (306-348)||(2673159-2673201)
chr3 (307-348)||(10207750-10207791)
chr3 (283-376)||(18656228-18656318)
chr3 (307-376)||(8512032-8512102)
chr3 (307-376)||(8516912-8516982)
chr3 (307-348)||(32475301-32475342)
[»] scaffold0464 (1 HSPs)
scaffold0464 (307-376)||(180-249)
[»] scaffold0479 (1 HSPs)
scaffold0479 (307-374)||(13166-13233)
[»] scaffold0259 (1 HSPs)
scaffold0259 (307-348)||(2478-2519)
[»] scaffold0197 (2 HSPs)
scaffold0197 (307-348)||(19392-19433)
scaffold0197 (307-348)||(14537-14578)
[»] scaffold0028 (1 HSPs)
scaffold0028 (307-348)||(149183-149224)
[»] scaffold0329 (1 HSPs)
scaffold0329 (68-149)||(16499-16579)
[»] scaffold0009 (1 HSPs)
scaffold0009 (307-348)||(182192-182233)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 35149780 - 35149499
Alignment:
Q  1 taggatgtagctcctgacctcccttgtccctaacatgaactagaccatcaggatgatgacatgcgttactcatggcatgaaaactcgtacattttccaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35149780 taggatgtagctcctgacctcccttgtccctaacatgaactagaccatcaggatgatgacatgcgttactcatggcatgaaaactcatacattttccaaa 35149681  T
Q  101 cattcattgcgtaaccatcttcaaagactcctccaacaccataaacaaaaacacgatcactcttaagggattttcgtaacatacttttccttttgtcagt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35149680 cattcattgcgcaaccatcttcaaagactcctccaacaccataaacaaaaacacgatcactcttaagggattttcgtaacatacttttccttttgtcaat 35149581  T
Q  201 acataggtgtagcgccttaagtgggtaaccatacaagaattacttttacttccttcctttccatttgtgcaacaatggaacc 282  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35149580 acataggtgtagcgccttaagagggtaaccatacgagaattacttttacttccttcctttccatttgtgcaacaatggaacc 35149499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 35127776 - 35127495
Alignment:
Q  4 gatgtagctcctgacctcccttgtccc-----taacatgaactagaccatcaggatgatgacatgcgttactcatggcatgaaaactcgtacattttcca 98  Q
    |||||||||||||||||||| || |||     |||||  ||| | ||||||| |||||||||||| || ||||||| |||||||||||  ||  ||||||    
T  35127776 gatgtagctcctgacctcccctgccccaacaataacacaaaccaaaccatcatgatgatgacatgtgtgactcatgacatgaaaactcaaac--tttcca 35127679  T
Q  99 aacattcattgcgtaaccatcttcaaagactcctccaacaccataaacaaaaacacgatcactcttaagggattttcgtaacatacttttccttttgtca 198  Q
    ||||| ||||||| ||| ||| |||||||||| | ||||||||||| ||||  ||| ||||||||| | || |||||| ||| |||||||||||| ||||    
T  35127678 aacatacattgcgcaacaatcctcaaagactctttcaacaccataagcaaat-cacaatcactcttgaaggcttttcgaaacgtacttttcctttcgtca 35127580  T
Q  199 gtacataggtgtagcgccttaag-tgggtaaccatacaagaattacttttacttccttcctttccatttgtgcaacaatggaacc 282  Q
    ||||||||||||||| ||||||| ||||  ||||||| ||||  || ||||||| ||||| | ||||  | | ||||||||||||    
T  35127579 gtacataggtgtagcaccttaagatggggcaccatacgagaaacacctttactttcttccctgccatccgggaaacaatggaacc 35127495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 39812278 - 39812186
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||| ||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  39812278 tgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaat 39812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 32246601 - 32246671
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||| || ||||| ||||||||||||    
T  32246601 aaaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaat 32246671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 44312892 - 44312822
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||| |||||||||||||||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||    
T  44312892 aaaatcttcacaccaatgaaa-taaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaat 44312822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 19344237 - 19344307
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| |||||||| |||||||||||| || |||| || ||||| |||||| |||||    
T  19344237 aaaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaat 19344307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 19349095 - 19349165
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| |||||||| |||||||||||| || |||| || ||||| |||||| |||||    
T  19349095 aaaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaat 19349165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 375
Target Start/End: Original strand, 28184297 - 28184388
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaa 375  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  28184297 tgttgtgaatccggtttcaaacaaa-ccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaa 28184388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 14737866 - 14737775
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||| | |||| |||||||||||||||||||||    
T  14737866 tgttgtgaatccggtttcaaataaa-ccttcacaccaatgaaa-taaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 14737775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 14742725 - 14742634
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||| | |||| |||||||||||||||||||||    
T  14742725 tgttgtgaatccggtttcaaataaa-ccttcacaccaatgaaa-taaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 14742634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 28155861 - 28155769
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||| |||||  ||||||||||||||||||||||  |||||| |||||||||||||||| || |||| ||||||||||||||| |||||    
T  28155861 tgttgtgaatccggttctaaacaaaaccttcacaccaatg-caataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagagcaaat 28155769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 6005234 - 6005275
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6005234 aaccttcacaccaatgagaataaaccaatgatgtgtggagca 6005275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 33336212 - 33336171
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  33336212 aaccttcacaccaatgagaataaaccaatgatgtgtggagca 33336171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 11856788 - 11856858
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  11856788 aaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 11856858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 16838561 - 16838602
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  16838561 aaccttcacaccaatgagaataaaccaatgatatgtggagca 16838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 33330715 - 33330674
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  33330715 aaccttcacaccaattagaataaaccaatgatgtgtggagca 33330674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 22010965 - 22010895
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||| |||||||||||||||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||    
T  22010965 aaaatcttcacaccaatgaaa-taaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaat 22010895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 6438319 - 6438383
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaac 372  Q
    |||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||    
T  6438319 aaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaac 6438383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 5343297 - 5343338
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  5343297 aaccttcacaccaatgagaataagtcaatgatgtgtggagca 5343338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 9930 - 9838
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||| |||||    
T  9930 tgttgtgaatccggtttcaaacaaa-ccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaat 9838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 170 - 108
Alignment:
Q  284 gttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  170 gttgtgaatccggtttcaaacaaa-ccttcacaccaattaaa-taaaccaatgatgtgtggagca 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 34241 - 34147
Alignment:
Q  281 cctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  34241 cctgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 34147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 41386541 - 41386635
Alignment:
Q  281 cctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  41386541 cctgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 41386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 25445357 - 25445288
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  25445357 aaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaat 25445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 41398032 - 41398121
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaaca 373  Q
    |||||||||| ||||| |||| ||| ||||||||||||||||| ||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  41398032 tgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaa-taaaccaattatgtgtggagcaagtgatagtgataatcaatgagaaca 41398121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 44024141 - 44024071
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| ||||||||||||||||||||| |  |||| |||||||||||||||||||||    
T  44024141 aaaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaat 44024071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 1055279 - 1055210
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  1055279 aaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaat 1055210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 39445317 - 39445386
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  39445317 aaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaat 39445386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 43988734 - 43988664
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||| ||||||| |||||| |||||||||||||||| || ||||  ||||||| |||||| |||||    
T  43988734 aaccttcacgccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaat 43988664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 28807843 - 28807773
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  28807843 aaaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 28807773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 37561715 - 37561644
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| |||||||||| |||||||||||| || |||| |||||||| |||||| |||||    
T  37561715 aaaccttcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaat 37561644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 2785192 - 2785233
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  2785192 aaccttcacaccaatgagaataaaccaatgatgtgtggagca 2785233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 37556889 - 37556822
Alignment:
Q  310 cttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||| |||||||||| |||||||||||| || |||| |||||||| |||||| |||||    
T  37556889 cttcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaat 37556822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 31397261 - 31397220
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  31397261 aaccttcacaccaatgagaataaatcaatgatgtgtggagca 31397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 31402118 - 31402077
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  31402118 aaccttcacaccaatgagaataaatcaatgatgtgtggagca 31402077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 33767996 - 33768037
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  33767996 aaccttcacatcaatgagaataaaccaatgatgtgtggagca 33768037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 33791133 - 33791174
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  33791133 aaccttcacatcaatgagaataaaccaatgatgtgtggagca 33791174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 1457423 - 1457360
Alignment:
Q  312 tcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||||||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||    
T  1457423 tcacaccaatgaaa-taaac-aatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 1457360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 19992130 - 19992199
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  19992130 aaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaat 19992199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 24024618 - 24024526
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||| ||||| |||| |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  24024618 tgttgtgaatccggttccaaagaaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaat 24024526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 31109873 - 31109781
Alignment:
Q  282 ctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||| ||||| ||||||||||| |||| | |||| |||||||||||||||||||||    
T  31109873 ctgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaa-taaac-aatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaat 31109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 12396728 - 12396798
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  12396728 aaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 12396798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 12406148 - 12406218
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  12406148 aaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 12406218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 4866546 - 4866616
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||| ||||||    
T  4866546 aaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgaggacaaat 4866616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 21812507 - 21812437
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| |||||||| |||||||||||| || |||| || ||||| |||||| |||||    
T  21812507 aaaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaat 21812437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 16879889 - 16879930
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  16879889 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 16879930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 16884745 - 16884786
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  16884745 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 16884786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 24261592 - 24261551
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  24261592 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 24261551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 24266471 - 24266430
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  24266471 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 24266430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 18855544 - 18855613
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  18855544 aaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaat 18855613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 9229485 - 9229392
Alignment:
Q  282 ctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||| |||||  ||| |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  9229485 ctgttgtgaatccggttaaaaaaaaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 9229392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 3813840 - 3813910
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||| || |||||||||||| |||||    
T  3813840 aaaccttcacaccaatgaaa-taaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaat 3813910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 5732458 - 5732548
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||| ||||| |||| ||| ||||||||||||||||||||   |||||||||||||||| || |||  || ||||||||||||||||||    
T  5732458 tgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaaata---caatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaat 5732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 9224675 - 9224605
Alignment:
Q  305 aaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  9224675 aaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 9224605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 45348085 - 45348016
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||| ||||||||||||    
T  45348085 aaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagtgatagtggtaatctatgagaacaaat 45348016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 45357564 - 45357495
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||| ||||||||||||    
T  45357564 aaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagtgatagtggtaatctatgagaacaaat 45357495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 51520280 - 51520343
Alignment:
Q  312 tcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||||||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||    
T  51520280 tcacaccaatgaaa-taaac-aatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 51520343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 56146974 - 56146912
Alignment:
Q  311 ttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaa 374  Q
    ||||||||||||||| ||||| ||||||||||||||| || |||| || ||||||||||||||||    
T  56146974 ttcacaccaatgaaa-taaac-aatgatgtgtggagcaagagatagtggtaatcaatgagaacaa 56146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 35353 - 35260
Alignment:
Q  282 ctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||| |||||  ||| |||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  35353 ctgttgtgaatccggttaaaaaaaaaaccttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 35260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 39785092 - 39785022
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  39785092 aaaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaat 39785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 25328568 - 25328476
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||| ||||| |||| ||| |||||||| |||||||| |||| |||||||||| |||||| | |||| |||||||||||||||||||||    
T  25328568 tgttgtgaatccggttccaaagaaa-ccttcacaacaatgaaa-taaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaat 25328476  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 35745208 - 35745249
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  35745208 aaccttcacaccaatgagaataaaccaatgatgtgtggagca 35745249  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 6311121 - 6311184
Alignment:
Q  312 tcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaaat 376  Q
    |||||||||||||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||    
T  6311121 tcacaccaatgaaa-taaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaat 6311184  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 10684533 - 10684492
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  10684533 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 10684492  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 22173485 - 22173393
Alignment:
Q  282 ctgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||| ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||| || |||| || ||||||||||||||||||    
T  22173485 ctgttgtgaatccggtttcaaac-aaatcttcacaccaatg-aaataaa-caatgatgtgtggagcaagagatagtggtaatcaatgagaacaaat 22173393  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 2677357 - 2677286
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||  ||||||| |||||| |||||    
T  2677357 aaaccttcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaat 2677286  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 2673201 - 2673159
Alignment:
Q  306 aaaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  2673201 aaaccttcacaccaatgagaataaaccaatgatgtgtggagca 2673159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 10207750 - 10207791
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10207750 aaccttcacaccaatgagaataaaccaatgatgtgtggagca 10207791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 18656228 - 18656318
Alignment:
Q  283 tgttgtgaatgcggtttcaaacaaaaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    |||||||||| ||||| |||| ||| ||||||||||||||||||||   |||||||||||||||| || |||  || ||||||||||||||||||    
T  18656228 tgttgtgaatccggttccaaagaaa-ccttcacaccaatgaaaata---caatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaat 18656318  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 8512032 - 8512102
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||| |||||| |||||||||||||||| || ||||  ||||||| |||||| |||||    
T  8512032 aaccttcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaat 8512102  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 8516912 - 8516982
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||| |||||| |||||||||||||||| || ||||  ||||||| |||||| |||||    
T  8516912 aaccttcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaat 8516982  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 32475301 - 32475342
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  32475301 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 32475342  T

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Target: scaffold0464 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 180 - 249
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagc-agggatattgataatcaatgagaacaaat 376  Q
    ||||||||||||||||||| |||||||| |||||||||||| || |||  |||||||||||||||||||||    
T  180 aaccttcacaccaatgaaa-taaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaat 249  T

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Target: scaffold0479 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 13166 - 13233
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagcagg-gatattgataatcaatgagaacaa 374  Q
    ||||||||||||||||||| |||||||| ||| ||||||||| | |||| |||||||||||||||||||    
T  13166 aaccttcacaccaatgaaa-taaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

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Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 2519 - 2478
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  2519 aaccttcacaccaatgagaataaatcaatgatgtgtggagca 2478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 19433 - 19392
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  19433 aaccttcacaccaatgagaataaatcaatgatgtgtggagca 19392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 14578 - 14537
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  14578 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 14537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 149224 - 149183
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  149224 aaccttcacaccaatgagaataaatcaatgatgtgtggagca 149183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 16579 - 16499
Alignment:
Q  68 actcatggcatgaaaactcgtacattttccaaacattcattgcgtaaccatcttcaaagactcctccaacaccataaacaaa 149  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||  ||| |||| |||||| |||||||||  |||||||||||    
T  16579 actcatgacatgaaaactcatacacattccaaacatccattgtttaa-catcctcaaagtctcctccaaagccataaacaaa 16499  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 182233 - 182192
Alignment:
Q  307 aaccttcacaccaatgaaaataaaccaatgatgtgtggagca 348  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  182233 aaccttcacaccaatgagaataaatcaaagatgtgtggagca 182192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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