View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_36 (Length: 371)
Name: NF11537_high_36
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 10977217 - 10976872
Alignment:
| Q |
19 |
actactgccctcca--gacgaagatccatggtgaaaatcttttccatatccaaatcgtgcgaacaaaggagcatattaatcatgttgttgctctttgaag |
116 |
Q |
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| T |
10977217 |
actactgccctccacagacgaagatccatggtgaaaatcttttccatatccaaatcgtgcgaacaaaggagcatattaatcatgttgttgctctttgaag |
10977118 |
T |
|
| Q |
117 |
atgagctcctcaaaatcaaactgaatagcctcatgtgcaacagtgtgctcaagttcaaccctctccatatggttatggtgttccatggtgtctccttcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10977117 |
atgagctcctcaaaatcaaactgaatagcctcatgtgcaacagtgtgctcaagttcaaccctctccatatggttatggtgttccatggtgtctccttcaa |
10977018 |
T |
|
| Q |
217 |
tcgcatcatctgcaacacattgaagcgacctattggaatgtgcattgctttctagagatccatcatggaatttatttgattcataaggataatctatcaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10977017 |
tcgcatcatctgcaacacattgaagcgacctattggaatgtgcattgctttctagagatccatcatggaatttatttcattcataaggataatctatcaa |
10976918 |
T |
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| Q |
317 |
aacgaggccaagcttgtggcatgttgcgtcctcctactgcctatgc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10976917 |
aacgaggccaagcttgtggcatgttgcgtcctcctactgcctatgc |
10976872 |
T |
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