View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_38 (Length: 358)
Name: NF11537_high_38
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 179 - 343
Target Start/End: Original strand, 48643738 - 48643901
Alignment:
| Q |
179 |
agttatgtacatatagctaatagttttgtttgttggtgagatctatgttggatctttgttatcatagcttctcatcactatctttaaaatcttaaatggt |
278 |
Q |
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| T |
48643738 |
agttttgtacatatagctaatagttttgtttgttggtgagatctatgtaggatctttgttatcatagcttctcatcactatctttaaaatcttaaatggt |
48643837 |
T |
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| Q |
279 |
ttaaatttgtttgagtcttccttttagtgtcatgctttattcaattcgaatttaataattttgtt |
343 |
Q |
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| T |
48643838 |
ttaaatttgtttgagtcttcc-tttagtgtcatgctttattcaattcgaatttaataattttgtt |
48643901 |
T |
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Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 286
Target Start/End: Original strand, 18784204 - 18784400
Alignment:
| Q |
91 |
aaatgaatttatgagccttttactcaactatggctgagttgtgcgcaaaatgtgaagggatcat--ggggtgttgcaccagtagtgcaaaagttatgtac |
188 |
Q |
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| T |
18784204 |
aaatgaatttaggaggcttttactcaattatggttgagttatgcacaaaatatgaactggtcatatggggttttgcaccagcag-gcagaagttatgtac |
18784302 |
T |
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| Q |
189 |
atatagctaatagttttgtttgttggtgagatctatgttggatctttgttatcatagcttctcatcactatctttaaaatcttaaatggtttaaattt |
286 |
Q |
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| T |
18784303 |
atatagctaatagttttgtttgttagtgacgtctatgttggatctttgttatcatagcttctcatcacaatctttaaaatcataaatggtttaaattt |
18784400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 286
Target Start/End: Original strand, 14983657 - 14983896
Alignment:
| Q |
46 |
gaaggtgatataatgttagaacattgagaggtaaagccttttgcgaaatgaatttatgagccttttactcaactatggctgagttgtgcgcaaaatgtga |
145 |
Q |
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| T |
14983657 |
gaaggtgatgtaatgttagaatgttgag--gtaaaggtttcttctaattgaatttatgaggctcttactcaattattgttgagttgtgcacaaaatgtaa |
14983754 |
T |
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| Q |
146 |
agggatcatggggtgttgcaccagtagtgca-aaagttatgtacatatagctaatagttttgtttgttggtgagatctatgttggatctttgttatcata |
244 |
Q |
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| T |
14983755 |
agtggtcatggggtgttacaccaaccgtgcacaaagttatgtatatatatctaatagttttgtttgttagtgacatctatgttggatgtctattatcata |
14983854 |
T |
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| Q |
245 |
gcttctcatcactatctttaaaatcttaaatggtttaaattt |
286 |
Q |
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| T |
14983855 |
gcttctcaacacaacctttaaaatctaaaataatttaaattt |
14983896 |
T |
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