View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11537_high_39 (Length: 353)

Name: NF11537_high_39
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11537_high_39
NF11537_high_39
[»] chr8 (5 HSPs)
chr8 (95-337)||(16343664-16343902)
chr8 (11-74)||(16343609-16343672)
chr8 (44-90)||(10538281-10538327)
chr8 (36-77)||(30880719-30880760)
chr8 (41-153)||(6162457-6162569)
[»] chr5 (1 HSPs)
chr5 (17-129)||(12042591-12042703)
[»] scaffold0196 (1 HSPs)
scaffold0196 (253-337)||(30459-30543)
[»] chr2 (1 HSPs)
chr2 (49-80)||(31437712-31437743)
[»] chr3 (1 HSPs)
chr3 (65-147)||(9754414-9754496)
[»] scaffold0023 (1 HSPs)
scaffold0023 (41-78)||(138709-138746)
[»] chr4 (1 HSPs)
chr4 (36-77)||(18621191-18621232)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 95 - 337
Target Start/End: Original strand, 16343664 - 16343902
Alignment:
Q  95 gccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttctttgatgagcacacttaatagccaaaataacaccaaagatcgatctca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    |||    
T  16343664 gccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttctttgatgagcacactcaatagccaaaataacaccaaagatc----tca 16343759  T
Q  195 gcataaacagaattggcaagccctgtgttataagcgaaatagccaagacttatcccactgcaatttttaaagattcctccacaagctgctaaaccagaag 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  16343760 gcataaacagaattggcaagccctgtgttataagcgaaatagccaagactttccccactgcaatttttaaagattcctccacaagctgctaaaccagaag 16343859  T
Q  295 aacctaaggctgcaccatcagtattacatttgatccaagattg 337  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  16343860 aacctaaggttgcaccatcagtattacatttgatccaagattg 16343902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 16343609 - 16343672
Alignment:
Q  11 atgaagtgcatactactaatcataagcaagcagttctcccatctgttccttaattgccaaggaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16343609 atgaagtgcatactactaatcataagcaagcagttctcccatctgttccttaattgccaaggaa 16343672  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 10538327 - 10538281
Alignment:
Q  44 ttctcccatctgttccttaattgccaaggaacaatgtgtgatgactt 90  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||    
T  10538327 ttctcccatccgttctttaattgccaaggaacaatgtgtgataactt 10538281  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 30880719 - 30880760
Alignment:
Q  36 gcaagcagttctcccatctgttccttaattgccaaggaacaa 77  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  30880719 gcaagcagttctcccatatgtttcttaattgccaaggaacaa 30880760  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 6162457 - 6162569
Alignment:
Q  41 cagttctcccatctgttccttaattgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagtcagttgcaatccacaagttattcc 140  Q
    ||||| ||||| |||||||| |  |||||||||||||| | ||  || ||||| |||||  || | ||||||||||||||| ||| ||| ||||||| ||    
T  6162457 cagttgtcccacctgttcctcagatgccaaggaacaatctttgcagatttgaaggccaaaaaaactagcatagagtcagtttcaagccaaaagttatgcc 6162556  T
Q  141 agtttctttgatg 153  Q
    ||||| |||||||    
T  6162557 agtttttttgatg 6162569  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 12042591 - 12042703
Alignment:
Q  17 tgcatactactaatcataagcaagcagttctcccatctgttccttaattgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagt 116  Q
    |||||| |||| |||||||||||||| || || ||||| ||| | ||||||||||| ||| | || | |||||| || ||||||||||| ||||| ||||    
T  12042591 tgcatattactgatcataagcaagcaattttctcatctattcttcaattgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagt 12042690  T
Q  117 cagttgcaatcca 129  Q
    ||||  |||||||    
T  12042691 cagtgtcaatcca 12042703  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 30543 - 30459
Alignment:
Q  253 tgcaatttttaaagattcctccacaagctgctaaaccagaagaacctaaggctgcaccatcagtattacatttgatccaagattg 337  Q
    |||||| | ||||||| |||||||||||||| |||||||  |||||||  |  ||||| |||||||||||||| | |||||||||    
T  30543 tgcaatctctaaagatacctccacaagctgccaaaccagtggaacctagagaggcaccgtcagtattacattttacccaagattg 30459  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 31437712 - 31437743
Alignment:
Q  49 ccatctgttccttaattgccaaggaacaatgt 80  Q
    ||||||||||||||||||||||||||||||||    
T  31437712 ccatctgttccttaattgccaaggaacaatgt 31437743  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 9754496 - 9754414
Alignment:
Q  65 tgccaaggaacaatgtgtgatgacttgaaagccaaggaagccagcatagagtcagttgcaatccacaagttattccagtttct 147  Q
    ||||| ||||| || || |||||||||| |||||||| ||| |   ||||||||||  |||||||||| ||||||||||||||    
T  9754496 tgccagggaactatatgagatgacttgatagccaaggtagctaatctagagtcagtctcaatccacaaattattccagtttct 9754414  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 138709 - 138746
Alignment:
Q  41 cagttctcccatctgttccttaattgccaaggaacaat 78  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  138709 cagttttcccatctgtttcttaattgccaaggaacaat 138746  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 18621232 - 18621191
Alignment:
Q  36 gcaagcagttctcccatctgttccttaattgccaaggaacaa 77  Q
    |||||||||| ||||||||||| || ||||||||||||||||    
T  18621232 gcaagcagttttcccatctgtttctcaattgccaaggaacaa 18621191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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