View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_40 (Length: 351)
Name: NF11537_high_40
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 4033621 - 4033281
Alignment:
| Q |
1 |
catatataaaaaagaaactaaggtatattctatctatggagtctacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaatttta |
100 |
Q |
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| T |
4033621 |
catatataaaaaagaaactaaggtatattctatctatggagtctacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaatttga |
4033522 |
T |
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| Q |
101 |
gctttatgtcctttattagtttatttagttttctatgatatcaccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtca |
200 |
Q |
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| T |
4033521 |
gctttatgtcctttattagtttatttagttttctatgatatcaccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtca |
4033422 |
T |
|
| Q |
201 |
atgtttgatcataagtcttaatcacaaaaaggtgtctgtgatacaagtaggaaaataattgaaggaattaaataattttcaaatactattagaactattc |
300 |
Q |
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| T |
4033421 |
atgtttgatcataagtcttaatcacaaaaaggtgtctatgatacaagtaggaaaataattgaaggaatcaaataattttcaaatactattagaactattc |
4033322 |
T |
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| Q |
301 |
ttgccaacaaatccctcaaaagagtgtgctttcttctctct |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033321 |
ttgccaacaaatccctcaaaagagtgtgctttcttctctct |
4033281 |
T |
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