View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_43 (Length: 338)
Name: NF11537_high_43
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 42852922 - 42852615
Alignment:
| Q |
23 |
atggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgcctcaatgtcgtcaagcaagtcgcaaaaataccaactataaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852922 |
atggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgtgtctcaatgtcgtcaagcaagtcgcaaaaataccaactataaa |
42852823 |
T |
|
| Q |
123 |
cactacatataatcacaatctgagtaataaatttaaaacgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacacctatt |
222 |
Q |
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| T |
42852822 |
cactacatataatcacaatctgagtaaaaaaattaaaacgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacacctatt |
42852723 |
T |
|
| Q |
223 |
gacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattccgtattaattgctgatccgcctaaagatggca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852722 |
gacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgtgcgtgctctaagaaattccgtattaattgctgatccgcctaaagatggca |
42852623 |
T |
|
| Q |
323 |
tctgtgct |
330 |
Q |
| |
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|||||||| |
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| T |
42852622 |
tctgtgct |
42852615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42856449 - 42856378
Alignment:
| Q |
32 |
caagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgcctcaatgtcgtcaagcaagtcg |
103 |
Q |
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| T |
42856449 |
caagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtcaagcaagtcg |
42856378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42860516 - 42860445
Alignment:
| Q |
32 |
caagttcaaagataagcaataactatacagcagcagaaaaagaaatgcgcctcaatgtcgtcaagcaagtcg |
103 |
Q |
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| T |
42860516 |
caagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtcaagcaagtcg |
42860445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 42854103 - 42854041
Alignment:
| Q |
228 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
290 |
Q |
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||||||||||||||| |||||||||||||| ||| | |||| || |||||||||||||||||| |
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| T |
42854103 |
gttaaacaaacaaatggtaacttacatcctctcttgaataaatgagcgtgctctaagaaattc |
42854041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 42860383 - 42860281
Alignment:
| Q |
228 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaat------tccgtattaattgctgatccgcctaaagatggc |
321 |
Q |
| |
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||||||||||||||||| |||||||||||| ||| | |||| || | |||||||||||||| ||| | ||||| | ||||||||||||||||||| |
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| T |
42860383 |
gttaaacaaacaaatagcaacttacatcctctcttgaataaatgagtgtgctctaagaaattcttggtccatgttaatcgttgatccgcctaaagatggc |
42860284 |
T |
|
| Q |
322 |
atc |
324 |
Q |
| |
|
||| |
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| T |
42860283 |
atc |
42860281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 42848050 - 42848006
Alignment:
| Q |
180 |
gttagtttcaagaaaatatcaatctccaaatattacacctattga |
224 |
Q |
| |
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||||||||||||||||||| ||| | ||| ||||||||||||||| |
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|
| T |
42848050 |
gttagtttcaagaaaatatgaattttcaagtattacacctattga |
42848006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 21765157 - 21765105
Alignment:
| Q |
238 |
caaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
290 |
Q |
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||||||||||||||||||| |||||| | || ||||||||| ||||||||||| |
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| T |
21765157 |
caaatagtaacttacatcccatctcgtacaactgcgcgtgccctaagaaattc |
21765105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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