View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_high_49 (Length: 285)
Name: NF11537_high_49
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 45550342 - 45550599
Alignment:
| Q |
11 |
cacagatgaaagtattaactcaatggaaaacaaattgttagggtcactggagaaagagtaaaattcacattttatcctaatccaagaaatttattgaatc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45550342 |
cacacatgaaagtattaactcaatggaaaacaaattgttagtgtcactggagaaagagtaaaattcacattttatcctaatccaagaaatttattgaatc |
45550441 |
T |
|
| Q |
111 |
tcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaacttaactaatcatacctaagtttctaaggtat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45550442 |
tcaatgtaaataaaaatgaacgtctctattgtcttgtattgttttcattgaatctatttttaacaaaacttaaccgatcatacctaagtttctaaggtat |
45550541 |
T |
|
| Q |
211 |
atatcattggacatgtcaagttatttatttttctattgttgataacactatatcaaat |
268 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45550542 |
atatcattggacatgtcaagttattgatttttctattgttgataacactatatcaaat |
45550599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 45544343 - 45544410
Alignment:
| Q |
97 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatc |
164 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
45544343 |
aaattgattgaatatcaatgtaaataaaaaagaatgagtctattgacttatattattttcattgaatc |
45544410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 36615992 - 36615870
Alignment:
| Q |
97 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaacttaactaatcataccta |
196 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||| || | |||||| || |
|
|
| T |
36615992 |
aaattgattgaatgtcaatgcaaataaaaatgaatgagtctattgtcttgtattattttcactgaatttatttttaacaaaactataccattcatactta |
36615893 |
T |
|
| Q |
197 |
agtttctaaggtatatatcattg |
219 |
Q |
| |
|
| ||||||||||| ||||||||| |
|
|
| T |
36615892 |
aatttctaaggtaaatatcattg |
36615870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 19670993 - 19670886
Alignment:
| Q |
74 |
ttcacattttatcctaa-tccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctattttta |
172 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19670993 |
ttcacattttatcttatctccaaaaaattgattgaatcacaatgcaaataaaaatgaatgaatatattgtcttgtattattttcattgaatatattttta |
19670894 |
T |
|
| Q |
173 |
acaaaact |
180 |
Q |
| |
|
|||||||| |
|
|
| T |
19670893 |
acaaaact |
19670886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University