View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11537_high_6 (Length: 682)
Name: NF11537_high_6
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 40160869 - 40161311
Alignment:
| Q |
1 |
tagaataaaaacttaatttatttaaacaatgataaagatgtatatcaattaaaatttgatcttaaacatatcaaagcattgggccaaaaccatgtacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40160869 |
tagaataaaaacttaatttatttaaacaatgataaagatgtatatcaattaaaatttgatcttaaacatatcaaagcattgggccaaaaccatgtacatc |
40160968 |
T |
|
| Q |
101 |
aaggtgattatggtttcatagaaaatgccgttgagtccttaaagatgtgaaattgaaaatgccaaaggaaataaaaaatcagtaaatggtttcatagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40160969 |
aaggtgattatggtttcatagaaaatgccattgagtccttaaagatgtgaaattgaaaatgccaaaggaaataaaaaatcagtaaatggtttcatagaaa |
40161068 |
T |
|
| Q |
201 |
actatgtacctgctaatgtagttgcatataaaaaagaacctagtaactttagaataagtttccatcgttcgcctcagtgcattctgtaaccaaattgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161069 |
actatgtacctgctaatgtagttgcatataaaaaagaacctagtaactttagaataagtttccatcgttcgcctcagtgcattctgtaaccaaattgcag |
40161168 |
T |
|
| Q |
301 |
gtggtatgaaatcatttcactttattaattgaacaagcaaagcttggaatgaaaaacagtgaaaacatacctgagcatcttctgtcattgaatcagcctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161169 |
gtggtatgaaatcatttcactttattaattgaacaagcaaaggttggaatgaaaaacagtgaaaacatacctgagcatcttctgtcattgaatcagcctc |
40161268 |
T |
|
| Q |
401 |
gtcaagaacaatgatcttatacggtggacacggataaccactg |
443 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161269 |
gtcgagaacaatgatcttatacggtggacacggataaccactg |
40161311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 518 - 663
Target Start/End: Original strand, 40161386 - 40161531
Alignment:
| Q |
518 |
tattgtattccactttcacatacttcttaggcttattggtacccacagcgacagcagcgaaatctttgatcttagtccgaacaacattaataccacgatc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161386 |
tattgtattccactttcacatacttcttaggcttattggtacccacagcgacagcagcgaaatctttgatcttagtccgaacaacattaataccacgatc |
40161485 |
T |
|
| Q |
618 |
atcactagcattaagttccaaaaccctagatttatagagttcaggt |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40161486 |
atcactagcattaagttccaaaaccctagatttatagagttcaggt |
40161531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University