View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11537_high_61 (Length: 246)
Name: NF11537_high_61
Description: NF11537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11537_high_61 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 12647905 - 12648072
Alignment:
| Q |
79 |
tgggaacacaattttctgtttatactacctaatcagggccggcccaacgtgttaagaggcctaaagcaaatttatgatcaggccttttaaaatttaaata |
178 |
Q |
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| T |
12647905 |
tgggaacacaattttctgtttatactacctaatcagggccggcccaacgtgttaagaggcctaaagcaaatttatgatcaggccttttaaaatttaaata |
12648004 |
T |
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| Q |
179 |
aataaacacaatgcttataaaaagaacaataatatcaagtttgaccgagaggatttgaggccttgatc |
246 |
Q |
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| T |
12648005 |
aataaacacaatgcttataaaaagaacaataatatcaagtttgaccgagaggatttgaggccttgatc |
12648072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 12647845 - 12647882
Alignment:
| Q |
19 |
atggtgcagaagatttcaagcattattatgatagcagt |
56 |
Q |
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| T |
12647845 |
atggtgcagaagatttcaagcattattatgatagcagt |
12647882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 29203971 - 29203804
Alignment:
| Q |
79 |
tgggaacacaattttctgtttatactacctaatcagggccggcccaacgtgttaagaggcctaaagcaaatttatgatcaggccttttaaaatttaaata |
178 |
Q |
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| T |
29203971 |
tgggaacacaattttctgtttatactacctaatcagggccggcccaatgtgttaagaggcctaaagcaaatttatgatcaggccttttaaaatttaaata |
29203872 |
T |
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| Q |
179 |
aataaacacaatgcttataaaaagaacaataatatcaagtttgaccgagaggatttgaggccttgatc |
246 |
Q |
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| T |
29203871 |
aataaacacaatgcttataaaaagaacaataatatcaagtttgaccgagaggatttgaggccttgatc |
29203804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 29204033 - 29203994
Alignment:
| Q |
17 |
acatggtgcagaagatttcaagcattattatgatagcagt |
56 |
Q |
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| T |
29204033 |
acatggtgcagaagatttcaagcattattatgatagcagt |
29203994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 43585278 - 43585389
Alignment:
| Q |
107 |
ctaatcagggccggcccaacgtgttaagaggcctaaagcaaa-tttatgatcaggccttttaaaatttaaataaataaacacaatgcttataaaaagaac |
205 |
Q |
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| T |
43585278 |
ctaatcagggccgacccaacatgtcaagaggcctaaaacaaattttataattaggtcttttggaattaaaaaaaat-aacacaatgcttattaaaagcat |
43585376 |
T |
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| Q |
206 |
aataatatcaagtt |
219 |
Q |
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| T |
43585377 |
aataa-atcaagtt |
43585389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 13510904 - 13511015
Alignment:
| Q |
107 |
ctaatcagggccggcccaacgtgttaagaggcctaaagcaaa-tttatgatcaggccttttaaaatttaaataaataaacacaatgcttataaaaagaac |
205 |
Q |
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| T |
13510904 |
ctaatcagggccgacccaacatgtcaagaggcctaaagcaaattttatgattaggtcttttggaattaaaaaaaat-aacacaatgcttattaaaagcat |
13511002 |
T |
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| Q |
206 |
aataatatcaagtt |
219 |
Q |
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| T |
13511003 |
aataa-atcaagtt |
13511015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 24579776 - 24579887
Alignment:
| Q |
107 |
ctaatcagggccggcccaacgtgttaagaggcctaaagcaaa-tttatgatcaggccttttaaaatttaaataaataaacacaatgcttataaaaagaac |
205 |
Q |
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| T |
24579776 |
ctaatcagggccgacccaacatgtcaagaggcttaaagcaaattttataattaggtcttttggaa-ttaaaaaaattaacacaatgcttattaaaagcat |
24579874 |
T |
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| Q |
206 |
aataatatcaagtt |
219 |
Q |
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| T |
24579875 |
aataa-atcaagtt |
24579887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 33440458 - 33440518
Alignment:
| Q |
112 |
cagggccggcccaacgtgttaagaggcctaaagcaaa-tttatgatcaggccttttaaaat |
171 |
Q |
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| T |
33440458 |
cagggccggccaaacatgtcaagaggcctaaagcaaattttataatgagaccttttaaaat |
33440518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 34912116 - 34912184
Alignment:
| Q |
121 |
cccaacgtgttaagaggcctaaagcaaatttatgatcaggccttttaaaatttaaataaataaacacaa |
189 |
Q |
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| T |
34912116 |
cccaacatgtttagaggcctaaagcaaatatatagtcaagccttttaaaataaaattaaaaaaacacaa |
34912184 |
T |
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